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The exchange of small molecular signals within microbial populations is generally referred to as quorum sensing (QS). QS is ubiquitous in nature and enables microorganisms to respond to fluctuations in living environments by working…

Cell Behavior · Quantitative Biology 2019-09-16 Yuting Fang , Adam Noel , Andrew W. Eckford , Nan Yang

Bacteria communicate using external chemical signals called autoinducers (AI) in a process known as quorum sensing (QS). QS efficiency is reduced by both limitations of AI diffusion and potential interference from neighboring strains. There…

Molecular Networks · Quantitative Biology 2016-12-28 Tahir I. Yusufaly , James Q. Boedicker

We propose a model for bacterial Quorum Sensing based on an auxiliary electrostatic-like interac-tion originating from a fictitious electrical charge that represents bacteria activity. A cooperative mechanism for charge/activity exchange is…

Biological Physics · Physics 2023-02-22 Eleonora Alfinito , Maura Cesaria , Matteo Beccaria

Quorum sensing is the regulation of gene expression in response to changes in cell density. To measure their cell density, bacterial populations produce and detect diffusible molecules called autoinducers. Individual bacteria internally…

Molecular Networks · Quantitative Biology 2017-04-12 Thibaud Taillefumier , Ned S. Wingreen

In quorum sensing (QS), bacteria exchange molecular signals to work together. An analytically-tractable model is presented for characterizing QS signal propagation within a population of bacteria and the number of responsive cooperative…

Information Theory · Computer Science 2020-09-03 Yuting Fang , Adam Noel , Andrew W. Eckford , Nan Yang , Jing Guo

Bacteria communicate using secreted chemical signaling molecules called autoinducers in a process known as quorum sensing. The quorum-sensing network of the marine bacterium {\it Vibrio harveyi} employs three autoinducers, each known to…

Molecular Networks · Quantitative Biology 2009-05-27 Pankaj Mehta , Sidhartha Goyal , Tao Long , Bonnie Bassler , Ned S. Wingreen

Microorganisms employ sophisticated mechanisms for intercellular communication and environmental sensing, with quorum sensing serving as a fundamental regulatory process. Dysregulation of quorum sensing has been implicated in various…

Emerging Technologies · Computer Science 2025-09-30 O. Tansel Baydas , Efe Yatgin , Ozgur B. Akan

A cooperative drug delivery system is proposed, where quorum sensing (QS), a density-dependent bacterial behavior coordination mechanism, is employed by synthetic bacterium-based nanomachines (B-NMs) for controllable drug delivery. In our…

Quantitative Methods · Quantitative Biology 2023-03-15 Yuting Fang , Stuart T. Johnston , Matt Faria , Xinyu Huang , Andrew W. Eckford , Jamie Evans

Bacteria generally live in complicated structures called biofilms, consisting of communicating bacterial colonies and extracellular polymeric substance (EPS). Since biofilms are related to detrimental effects such as infection or antibiotic…

Quantitative Methods · Quantitative Biology 2023-11-07 Fatih Gulec , Andrew W. Eckford

Quorum sensing is the mechanism by which bacteria communicate and synchronize group behaviors. Quantitative information on parameters such as the copy number of particular quorum-sensing proteins should contribute strongly to understanding…

Quantitative Methods · Quantitative Biology 2015-05-14 Shu-Wen Teng , Yufang Wang , Kimberly C. Tu , Tao Long , Pankaj Mehta , Ned S. Wingreen , Bonnie L. Bassler , N. P. Ong

To explain the stability of cooperation is a central task of evolutionary theory. We investigate this question in the case of quorum sensing (QS) bacteria, which regulate cooperative traits in response to population density. Cooperation is…

Populations and Evolution · Quantitative Biology 2019-05-02 Burkhard A. Hense , Matthew McIntosh , Johannes Müller , Martin Schuster

Within the context of evolution, an altruistic act that benefits the receiving individual at the expense of the acting individual is a puzzling phenomenon. An extreme form of altruism can be found in colicinogenic E. coli. These suicidal…

Neural and Evolutionary Computing · Computer Science 2016-03-31 Anya Elaine Johnson , Eli Strauss , Rodney Pickett , Christoph Adami , Ian Dworkin , Heather J. Goldsby

Microbial communities play a significant role in bioremediation,plant growth,human and animal digestion,global elemental cycles including the carbon-cycle,and water treatment.They are also posed to be the engines of renewable energy via…

Emerging Technologies · Computer Science 2016-01-12 Nicolò Michelusi , James Boedicker , Mohamed Y. El-Naggar , Urbashi Mitra

The field of quantum sensing aims at improving the detection and estimation of classical parameters that are encoded in physical systems by resorting to quantum sources of light and quantum detection strategies. The same approach can be…

We present a framework for analyzing luminescence regulation during quorum sensing in the bioluminescent bacterium \emph{Vibrio harveyi}. Using a simplified model for signal transduction in the quorum sensing pathway, we identify key…

Cell Behavior · Quantitative Biology 2009-10-22 Suman K Banik , Andrew T Fenley , Rahul V Kulkarni

Nutrient gradients and limitations play a pivotal role in the life of all microbes, both in their natural habitat as well as in artificial, microfluidic systems. Spatial concentration gradients of nutrients in densely packed cell…

Bacteria populations rely on mechanisms such as quorum sensing to coordinate complex tasks that cannot be achieved by a single bacterium. Quorum sensing is used to measure the local bacteria population density, and it controls cooperation…

Cell Behavior · Quantitative Biology 2018-02-14 Adam Noel , Yuting Fang , Nan Yang , Dimitrios Makrakis , Andrew W. Eckford

Rapid detection of bacterial growth is crucial in clinical, food safety, and environmental contexts, yet conventional optical methods are limited by noise and require hours of incubation. Here, we present the first experimental…

Molecular Communication (MC) utilizes chemical molecules to transmit information, introducing innovative strategies for pharmaceutical interventions and enhanced immune system monitoring. This paper explores Molecular communication based…

Biomolecules · Quantitative Biology 2024-12-31 Shees Zulfiqar , Ozgur B. Akan

Microbial communities frequently communicate via quorum sensing (QS), where cells produce, secrete, and respond to a threshold level of an autoinducer (AI) molecule, thereby modulating gene expression. However, the biology of QS remains…

Molecular Networks · Quantitative Biology 2017-08-02 Tahir Yusufaly , James Q. Boedicker
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