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The Active Matter Evaluation Package (AMEP) is a Python library for analyzing simulation data of particle-based and continuum simulations. It provides a powerful and simple interface for handling large data sets and for calculating and…

Reproducing, comparing and reusing results from machine learning and systems papers is a very tedious, ad hoc and time-consuming process. I will demonstrate how to automate this process using open-source, portable, customizable and…

Machine Learning · Computer Science 2019-04-02 Grigori Fursin

We present pomegranate, an open source machine learning package for probabilistic modeling in Python. Probabilistic modeling encompasses a wide range of methods that explicitly describe uncertainty using probability distributions. Three…

Artificial Intelligence · Computer Science 2018-03-01 Jacob Schreiber

Researchers working on the automatic parallelization of programs have long known that too much parallelism can be even worse for performance than too little, because spawning a task to be run on another CPU incurs overheads.…

Programming Languages · Computer Science 2011-09-08 Paul Bone , Zoltan Somogyi , Peter Schachte

Data preprocessing is often paid little attention in machine learning, despite its potentially significant impact on model performance. While automated machine learning pipelines are starting to recognize and integrate data preprocessing…

Machine Learning · Computer Science 2026-05-27 Yousef Koka , David Selby , Gerrit Großmann , Kathan Pandya , Sebastian Vollmer

Over the past few decades, neuroscience experiments have become increasingly complex and naturalistic. Experimental design has in turn become more challenging, as experiments must conform to an ever-increasing diversity of design…

Neurons and Cognition · Quantitative Biology 2020-12-07 Storm Slivkoff , Jack L. Gallant

Training machine learning models requires feeding input data for models to ingest. Input pipelines for machine learning jobs are often challenging to implement efficiently as they require reading large volumes of data, applying complex…

Machine Learning · Computer Science 2021-02-25 Derek G. Murray , Jiri Simsa , Ana Klimovic , Ihor Indyk

Understanding decision-making in clinical environments is of paramount importance if we are to bring the strengths of machine learning to ultimately improve patient outcomes. Several factors including the availability of public data, the…

Machine Learning · Computer Science 2022-03-15 Alex J. Chan , Ioana Bica , Alihan Huyuk , Daniel Jarrett , Mihaela van der Schaar

Information theory, i.e. the mathematical analysis of information and of its processing, has become a tenet of modern science; yet, its use in real-world studies is usually hindered by its computational complexity, the lack of coherent…

Physics and Society · Physics 2025-08-18 Carlson Moses Büth , Kishor Acharya , Massimiliano Zanin

ParaMonte::Python (standing for Parallel Monte Carlo in Python) is a serial and MPI-parallelized library of (Markov Chain) Monte Carlo (MCMC) routines for sampling mathematical objective functions, in particular, the posterior distributions…

Mathematical Software · Computer Science 2020-10-05 Amir Shahmoradi , Fatemeh Bagheri , Joshua Alexander Osborne

The increasing variety of input data and complexity of tasks that are handled by the devices of internet of things (IoT) environments require solutions that consider the limited hardware and computation power of the edge devices. Complex…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-02-24 Halit Uyanık , Tolga Ovatman

Processing-in-memory (PIM) solutions vastly accelerate systems by reducing data transfer between computation and memory. Memristors possess a unique property that enables storage and logic within the same device, which is exploited in the…

Hardware Architecture · Computer Science 2021-09-21 Orian Leitersdorf , Ronny Ronen , Shahar Kvatinsky

Transformer models gain popularity because of their superior inference accuracy and inference throughput. However, the transformer is computation-intensive, causing a long inference time. The existing works on transformer inference…

Performance · Computer Science 2023-04-19 Yuan Feng , Hyeran Jeon , Filip Blagojevic , Cyril Guyot , Qing Li , Dong Li

Existing Python libraries and tools lack the ability to efficiently compute statistical test results for large datasets in the presence of missing values. This presents an issue as soon as constraints on runtime and memory availability…

Mathematical Software · Computer Science 2025-05-02 Fabian Woller , Lis Arend , Christian Fuchsberger , Markus List , David B. Blumenthal

Input pipelines, which ingest and transform input data, are an essential part of training Machine Learning (ML) models. However, it is challenging to implement efficient input pipelines, as it requires reasoning about parallelism,…

Machine Learning · Computer Science 2022-03-22 Michael Kuchnik , Ana Klimovic , Jiri Simsa , Virginia Smith , George Amvrosiadis

Solutions to the Algorithm Selection Problem (ASP) in machine learning face the challenge of high computational costs associated with evaluating various algorithms' performances on a given dataset. To mitigate this cost, the meta-learning…

Machine Learning · Computer Science 2025-09-12 Cynthia Moreira Maia , Lucas B. V. de Amorim , George D. C. Cavalcanti , Rafael M. O. Cruz

Modeling of long history data suffers from long-context window attention dilution, system efficiency and catastrophic forgetting problems, where naive linear scaling approach like LastN would fail. We introduce Memento, a personalized…

While modern parallel computing systems offer high performance, utilizing these powerful computing resources to the highest possible extent demands advanced knowledge of various hardware architectures and parallel programming models.…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-05-03 Suejb Memeti , Sabri Pllana , Alecio Binotto , Joanna Kolodziej , Ivona Brandic

We present \texttt{secml}, an open-source Python library for secure and explainable machine learning. It implements the most popular attacks against machine learning, including test-time evasion attacks to generate adversarial examples…

Machine Learning · Computer Science 2022-05-16 Maura Pintor , Luca Demetrio , Angelo Sotgiu , Marco Melis , Ambra Demontis , Battista Biggio

While deep learning has celebrated many successes, its results often hinge on the meticulous selection of hyperparameters (HPs). However, the time-consuming nature of deep learning training makes HP optimization (HPO) a costly endeavor,…

Artificial Intelligence · Computer Science 2024-08-20 Shuhei Watanabe , Neeratyoy Mallik , Edward Bergman , Frank Hutter