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Simulations with high accuracy are an essential part of scientific research to accelerate the innovation process. They are especially useful for finding novel approaches or optimizing existing methods. Today, powerful software tools are…

Medical Physics · Physics 2022-08-31 Patrick Vogel , Martin A. Rückert , Thomas Kampf , Volker C. Behr

The ability to repeat the experiments from a research study and obtain similar results is a corner stone in experiment-based scientific discovery. This essential feature has been often ignored by the distributed computing and networking…

Networking and Internet Architecture · Computer Science 2014-10-08 Thierry Rakotoarivelo , Guillaume Jourjon , Olivier Mehani , Maximilian Ott , Mike Zink

Sample efficiency is a fundamental challenge in de novo molecular design. Ideally, molecular generative models should learn to satisfy a desired objective under minimal oracle evaluations (computational prediction or wet-lab experiment).…

Biomolecules · Quantitative Biology 2023-05-26 Jeff Guo , Philippe Schwaller

The Python Testbed for Federated Learning Algorithms is a simple Python FL framework that is easy to use by ML&AI developers who do not need to be professional programmers and is also amenable to LLMs. In the previous research, generic…

Artificial Intelligence · Computer Science 2025-09-08 Miroslav Popovic , Marko Popovic , Miodrag Djukic , Ilija Basicevic

We introduce Merlion, an open-source machine learning library for time series. It features a unified interface for many commonly used models and datasets for anomaly detection and forecasting on both univariate and multivariate time series,…

Recent advancements in Large Language Models (LLMs) have led to high-quality Machine-Generated Text (MGT), giving rise to countless new use cases and applications. However, easy access to LLMs is posing new challenges due to misuse. To…

Computation and Language · Computer Science 2024-04-15 Areg Mikael Sarvazyan , José Ángel González , Marc Franco-Salvador

The data science community today has embraced the concept of Dataframes as the de facto standard for data representation and manipulation. Ease of use, massive operator coverage, and popularization of R and Python languages have heavily…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-07-06 Niranda Perera , Supun Kamburugamuve , Chathura Widanage , Vibhatha Abeykoon , Ahmet Uyar , Kaiying Shan , Hasara Maithree , Damitha Lenadora , Thejaka Amila Kanewala , Geoffrey Fox

The evaluation of clustering algorithms can involve running them on a variety of benchmark problems, and comparing their outputs to the reference, ground-truth groupings provided by experts. Unfortunately, many research papers and graduate…

Machine Learning · Computer Science 2023-10-27 Marek Gagolewski

Process reward models (PRMs) have shown success in complex reasoning tasks for large language models (LLMs). However, their application to machine translation (MT) remains underexplored due to the lack of systematic methodologies and…

Computation and Language · Computer Science 2025-09-22 Zhaopeng Feng , Jiahan Ren , Jiayuan Su , Jiamei Zheng , Hongwei Wang , Zuozhu Liu

Procedural memory enables large language model (LLM) agents to internalize "how-to" knowledge, theoretically reducing redundant trial-and-error. However, existing frameworks predominantly suffer from a "passive accumulation" paradigm,…

Artificial Intelligence · Computer Science 2026-04-16 Zouying Cao , Jiaji Deng , Li Yu , Weikang Zhou , Zhaoyang Liu , Bolin Ding , Hai Zhao

The availability of open-source molecular simulation software packages allows scientists and engineers to focus on running and analyzing simulations without having to write, parallelize, and validate their own simulation software. While…

Computational Physics · Physics 2025-10-03 Simon Gravelle , Cecilia M. S. Alvares , Jacob R. Gissinger , Axel Kohlmeyer

Designing and implementing efficient, provably correct parallel machine learning (ML) algorithms is challenging. Existing high-level parallel abstractions like MapReduce are insufficiently expressive while low-level tools like MPI and…

Machine Learning · Computer Science 2014-08-12 Yucheng Low , Joseph E. Gonzalez , Aapo Kyrola , Danny Bickson , Carlos E. Guestrin , Joseph Hellerstein

Designing and implementing efficient, provably correct parallel machine learning (ML) algorithms is challenging. Existing high-level parallel abstractions like MapReduce are insufficiently expressive while low-level tools like MPI and…

Machine Learning · Computer Science 2010-06-28 Yucheng Low , Joseph Gonzalez , Aapo Kyrola , Danny Bickson , Carlos Guestrin , Joseph M. Hellerstein

Prevailing LLM serving engines employ expert parallelism (EP) to implement multi-device inference of massive MoE models. However, the efficiency of expert parallel inference is largely bounded by inter-device communication, as EP embraces…

Machine Learning · Computer Science 2026-03-02 Yan Li , Zhenyu Zhang , Zhengang Wang , Pengfei Chen , Pengfei Zheng

We offer an embedding of CPython that runs entirely in memory without "touching" the disk. This in-memory embedding can load Python scripts directly from memory instead these scripts having to be loaded from files on disk. Malware that…

Cryptography and Security · Computer Science 2021-05-06 Ateeq Sharfuddin , Brian Chapman , Chris Balles

In large language model-based agents, memory serves as a critical capability for achieving personalization by storing and utilizing users' information. Although some previous studies have adopted memory to implement user personalization,…

Artificial Intelligence · Computer Science 2025-08-20 Zeyu Zhang , Yang Zhang , Haoran Tan , Rui Li , Xu Chen

Automated code generation using large language models (LLMs) has gained attention due to its efficiency and adaptability. However, real-world coding tasks or benchmarks like HumanEval and StudentEval often lack dedicated training datasets,…

Software Engineering · Computer Science 2025-01-15 Shuai Wang , Liang Ding , Yibing Zhan , Yong Luo , Zheng He , Dapeng Tao

Presolving has become an essential component of modern MIP solvers both in terms of computational performance and numerical robustness. In this paper, we present PaPILO, a new C++ header-only library that provides a large set of presolving…

Optimization and Control · Mathematics 2024-03-21 Ambros Gleixner , Leona Gottwald , Alexander Hoen

MDMP is a new parallel programming approach that aims to provide users with an easy way to add parallelism to programs, optimise the message passing costs of traditional scientific simulation algorithms, and enable existing MPI-based…

Distributed, Parallel, and Cluster Computing · Computer Science 2013-04-30 Adrian Jackson , Par Strand

The study of complex many-body systems via analysis of the trajectories of the units that dynamically move and interact within them is a non-trivial task. The workflow for extracting meaningful information from the raw trajectory data is…

Materials Science · Physics 2025-10-31 Simone Martino , Matteo Becchi , Andrew Tarzia , Daniele Rapetti , Giovanni M. Pavan
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