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Volumetric image segmentation with convolutional neural networks (CNNs) encounters several challenges, which are specific to medical images. Among these challenges are large volumes of interest, high class imbalances, and difficulties in…

Computer Vision and Pattern Recognition · Computer Science 2019-11-12 Fabian Balsiger , Yannick Soom , Olivier Scheidegger , Mauricio Reyes

Particle picking is a time-consuming step in single-particle analysis and often requires significant interventions from users, which has become a bottleneck for future automated electron cryo-microscopy (cryo-EM). Here we report a deep…

Quantitative Methods · Quantitative Biology 2016-05-09 Feng Wang , Huichao Gong , Gaochao liu , Meijing Li , Chuangye Yan , Tian Xia , Xueming Li , Jianyang Zeng

This research uses deep learning to estimate the topology of manifolds represented by sparse, unordered point cloud scenes in 3D. A new labelled dataset was synthesised to train neural networks and evaluate their ability to estimate the…

Computer Vision and Pattern Recognition · Computer Science 2023-10-02 Dylan Peek , Matt P. Skerritt , Stephan Chalup

We propose an auto-encoding network architecture for point clouds (PC) capable of extracting shape signatures without supervision. Building on this, we (i) design a loss function capable of modelling data variance on PCs which are…

Image and Video Processing · Electrical Eng. & Systems 2019-08-06 Anjany Sekuboyina , Markus Rempfler , Alexander Valentinitsch , Maximilian Loeffler , Jan S. Kirschke , Bjoern H. Menze

The segmentation of forest LiDAR 3D point clouds, including both individual tree and semantic segmentation, is fundamental for advancing forest management and ecological research. However, current approaches often struggle with the…

Computer Vision and Pattern Recognition · Computer Science 2025-08-07 Binbin Xiang , Maciej Wielgosz , Stefano Puliti , Kamil Král , Martin Krůček , Azim Missarov , Rasmus Astrup

With the rapid growth of open-source ecosystems (e.g., Linux) and domain-specific software projects (e.g., aerospace), efficient management of reusable artifacts is becoming increasingly crucial for software reuse. The multi-level feature…

Software Engineering · Computer Science 2025-07-08 Dongming Jin , Zhi Jin , Nianyu Li , Kai Yang , Linyu Li , Suijing Guan

Unlike on images, semantic learning on 3D point clouds using a deep network is challenging due to the naturally unordered data structure. Among existing works, PointNet has achieved promising results by directly learning on point sets.…

Computer Vision and Pattern Recognition · Computer Science 2018-04-05 Yiru Shen , Chen Feng , Yaoqing Yang , Dong Tian

Three-dimensional (3D) point cloud analysis has become one of the attractive subjects in realistic imaging and machine visions due to its simplicity, flexibility and powerful capacity of visualization. Actually, the representation of scenes…

Computer Vision and Pattern Recognition · Computer Science 2025-01-28 Omar Elharrouss , Kawther Hassine , Ayman Zayyan , Zakariyae Chatri , Noor almaadeed , Somaya Al-Maadeed , Khalid Abualsaud

In the field of SLAM (Simultaneous Localization And Mapping) for robot navigation, mapping the environment is an important task. In this regard the Lidar sensor can produce near accurate 3D map of the environment in the format of point…

Computer Vision and Pattern Recognition · Computer Science 2020-09-15 Aritra Mukherjee , Sourya Dipta Das , Jasorsi Ghosh , Ananda S. Chowdhury , Sanjoy Kumar Saha

Classification and segmentation of 3D point clouds are important tasks in computer vision. Because of the irregular nature of point clouds, most of the existing methods convert point clouds into regular 3D voxel grids before they are used…

Computer Vision and Pattern Recognition · Computer Science 2018-12-05 Wei Zeng , Theo Gevers

Semantic scene reconstruction from point cloud is an essential and challenging task for 3D scene understanding. This task requires not only to recognize each instance in the scene, but also to recover their geometries based on the partial…

Computer Vision and Pattern Recognition · Computer Science 2022-07-19 Jiaxiang Tang , Xiaokang Chen , Jingbo Wang , Gang Zeng

Semantic segmentation of 3D point clouds is a challenging problem with numerous real-world applications. While deep learning has revolutionized the field of image semantic segmentation, its impact on point cloud data has been limited so…

Computer Vision and Pattern Recognition · Computer Science 2017-05-10 Felix Järemo Lawin , Martin Danelljan , Patrik Tosteberg , Goutam Bhat , Fahad Shahbaz Khan , Michael Felsberg

Orchard and tree-child networks share an important property with phylogenetic trees: they can be completely reduced to a single node by iteratively deleting cherries and reticulated cherries. As it is the case with phylogenetic trees, the…

Populations and Evolution · Quantitative Biology 2024-03-22 Tomás M. Coronado , Joan Carles Pons , Gabriel Riera

We present the first fixed-parameter algorithm for constructing a tree-child phylogenetic network that displays an arbitrary number of binary input trees and has the minimum number of reticulations among all such networks. The algorithm…

Discrete Mathematics · Computer Science 2019-07-22 Leo van Iersel , Remie Janssen , Mark Jones , Yukihiro Murakami , Norbert Zeh

Panoptic segmentation is the combination of semantic and instance segmentation: assign the points in a 3D point cloud to semantic categories and partition them into distinct object instances. It has many obvious applications for outdoor…

Computer Vision and Pattern Recognition · Computer Science 2023-07-07 Binbin Xiang , Torben Peters , Theodora Kontogianni , Frawa Vetterli , Stefano Puliti , Rasmus Astrup , Konrad Schindler

Keypoint annotation in point clouds is an important task for 3D reconstruction, object tracking and alignment, in particular in deformable or moving scenes. In the context of agriculture robotics, it is a critical task for livestock…

Robotics · Computer Science 2022-11-17 Raphael Falque , Teresa Vidal-Calleja , Alen Alempijevic

Generation of 3D data by deep neural network has been attracting increasing attention in the research community. The majority of extant works resort to regular representations such as volumetric grids or collection of images; however, these…

Computer Vision and Pattern Recognition · Computer Science 2016-12-08 Haoqiang Fan , Hao Su , Leonidas Guibas

Accurate estimation of plant skeletal structures (e.g., branching structures) from images is essential for smart agriculture and plant science. Unlike human skeletons with fixed topology, plant skeleton estimation presents a unique…

Computer Vision and Pattern Recognition · Computer Science 2026-05-19 Xinpeng Liu , Hiroaki Santo , Yosuke Toda , Fumio Okura

The work proposes an image segmentation algorithm that isolates slender regions in three-dimensional microstructures. Characterizing slender regions in material microstructures is an extremely important aspect in material science because…

Data Analysis, Statistics and Probability · Physics 2025-03-13 Vinit Vijay Deshpande , Romana Piat

Fruit tree image segmentation is an essential problem in automating a variety of agricultural tasks such as phenotyping, harvesting, spraying, and pruning. Many research papers have proposed a diverse spectrum of solutions suitable to…

Computer Vision and Pattern Recognition · Computer Science 2024-12-20 Il-Seok Oh