Related papers: Ranking and Unranking k-subsequence universal word…
A non-empty word $w$ is a border of the word $u$ if $\vert w\vert<\vert u\vert$ and $w$ is both a prefix and a suffix of $u$. A word $u$ with the border $w$ is closed if $u$ has exactly two occurrences of $w$. A word $u$ is privileged if…
In this paper we define a new problem, motivated by computational biology, $LCSk$ aiming at finding the maximal number of $k$ length $substrings$, matching in both input strings while preserving their order of appearance. The traditional…
An ordered set partition of $\{1,2,\ldots,n\}$ is a partition with an ordering on the parts. Let $\mathcal{OP}_{n,k}$ be the set of ordered set partitions of $[n]$ with $k$ blocks. Godbole, Goyt, Herdan and Pudwell defined…
We prove that a uniformly random automaton with $n$ states on a 2-letter alphabet has a synchronizing word of length $O(n^{1/2}\log n)$ with high probability (w.h.p.). That is to say, w.h.p. there exists a word $\omega$ of such length, and…
For every natural number $n\geq 2$ and every finite sequence $L$ of natural numbers, we consider the set $UD_n(L)$ of all uniquely decodable codes over an $n$-letter alphabet with the sequence $L$ as the sequence of code word lengths, as…
Following (Kolpakov et al., 2013; Gawrychowski and Manea, 2015), we continue the study of {\em $\alpha$-gapped repeats} in strings, defined as factors $uvu$ with $|uv|\leq \alpha |u|$. Our main result is the $O(\alpha n)$ bound on the…
We study algorithms for solving three problems on strings. The first one is the Most Frequently String Search Problem. The problem is the following. Assume that we have a sequence of $n$ strings of length $k$. The problem is finding the…
A word~$w$ has a border $u$ if $u$ is a non-empty proper prefix and suffix of $u$. A word~$w$ is said to be \emph{closed} if $w$ is of length at most $1$ or if $w$ has a border that occurs exactly twice in $w$. A word~$w$ is said to be…
The problem of ranking can be described as follows. We have a set of combinatorial objects $S$, such as, say, the k-subsets of n things, and we can imagine that they have been arranged in some list, say lexicographically, and we want to…
A degenerate or indeterminate string on an alphabet $\Sigma$ is a sequence of non-empty subsets of $\Sigma$. Given a degenerate string $t$ of length $n$, we present a new method based on the Burrows--Wheeler transform for searching for a…
We address the non-redundant random generation of $k$ words of length $n$ in a context-free language. Additionally, we want to avoid a predefined set of words. We study a rejection-based approach, whose worst-case time complexity is shown…
Unlabelled Necklaces are an equivalence class of cyclic words under both the rotation (cyclic shift) and the relabelling operations. The relabelling of a word is a bijective mapping from the alphabet to itself. The main result of the paper…
Starting in the 1970s with the fundamental work of Imre Simon, \emph{scattered factors} (also known as subsequences or scattered subwords) have remained a consistently and heavily studied object. The majority of work on scattered factors…
Given a random text over a finite alphabet, we study the frequencies at which fixed-length words occur as subsequences. As the data size grows, the joint distribution of word counts exhibits a rich asymptotic structure. We investigate all…
The sequential structure of language, and the order of words in a sentence specifically, plays a central role in human language processing. Consequently, in designing computational models of language, the de facto approach is to present…
This paper presents Semantic SentenceRank (SSR), an unsupervised scheme for automatically ranking sentences in a single document according to their relative importance. In particular, SSR extracts essential words and phrases from a text…
The main result of the paper is the first polynomial-time algorithm for ranking bracelets. The time-complexity of the algorithm is O(k^2 n^4), where k is the size of the alphabet and n is the length of the considered bracelets. The key part…
A weighted string over an alphabet of size $\sigma$ is a string in which a set of letters may occur at each position with respective occurrence probabilities. Weighted strings, also known as position weight matrices or uncertain sequences,…
Described are two algorithms to find long approximate palindromes in a string, for example a DNA sequence. A simple algorithm requires O(n)-space and almost always runs in $O(k.n)$-time where n is the length of the string and k is the…
Overlaps between words are crucial in many areas of computer science, such as code design, stringology, and bioinformatics. A self overlapping word is characterized by its periods and borders. A period of a word $u$ is the starting position…