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Reconstructing interactions from observational data is a critical need for investigating natural biological networks, wherein network dimensionality (i.e. number of interacting components) is usually high and interactions are time-varying.…

Populations and Evolution · Quantitative Biology 2021-02-09 Chun-Wei Chang , Takeshi Miki , Masayuki Ushio , Hsiao-Pei Lu , Fuh-Kwo Shiah , Chih-hao Hsieh

Dynamical systems are used to model a variety of phenomena in which the bifurcation structure is a fundamental characteristic. Here we propose a statistical machine-learning approach to derive lowdimensional models that automatically…

Quantitative Methods · Quantitative Biology 2015-06-11 Yohei Kondo , Kunihiko Kaneko , Shuji Ishihara

A central challenge in data visualization is to understand which data samples are required to generate an image of a data set in which the relevant information is encoded. In this work, we make a first step towards answering the question of…

Graphics · Computer Science 2021-03-12 Sebastian Weiss , Mustafa Işık , Justus Thies , Rüdiger Westermann

We study expanding circle maps interacting in a heterogeneous random network. Heterogeneity means that some nodes in the network are massively connected, while the remaining nodes are only poorly connected. We provide a probabilistic…

Dynamical Systems · Mathematics 2013-08-27 Tiago Pereira , Sebastian van Strien , Jeroen S. W. Lamb

We propose the use of recurrent neural networks for classifying phases of matter based on the dynamics of experimentally accessible observables. We demonstrate this approach by training recurrent networks on the magnetization traces of two…

Disordered Systems and Neural Networks · Physics 2018-08-22 Evert van Nieuwenburg , Eyal Bairey , Gil Refael

Promising results have driven a recent surge of interest in continuous optimization methods for Bayesian network structure learning from observational data. However, there are theoretical limitations on the identifiability of underlying…

Randomly coupled neural fields demonstrate chaotic variation of firing rates, if the coupling is strong enough, as has been shown by Sompolinsky et. al [Phys. Rev. Lett., v. 61, 259 (1988)]. We present a method for reconstruction of the…

Chaotic Dynamics · Physics 2016-07-20 A. Pikovsky

Complex dynamical systems are often modeled as networks, with nodes representing dynamical units which interact through the network's links. Gene regulatory networks, responsible for the production of proteins inside a cell, are an example…

Statistical Mechanics · Physics 2009-09-30 Zoran Levnajić

Automatically detecting and recovering from failures is an important but challenging problem for autonomous robots. Most of the recent work on learning to plan from demonstrations lacks the ability to detect and recover from errors in the…

Discovering governing equations that describe complex chaotic systems remains a fundamental challenge in physics and neuroscience. Here, we introduce the PEM-UDE method, which combines the prediction-error method with universal differential…

In distributed systems, knowledge of the network structure of the connections among the unitary components is often a requirement for an accurate prediction of the emerging collective dynamics. However, in many real-world situations, one…

Physics and Society · Physics 2025-03-21 Yin-Jie Ma , Zhi-Qiang Jiang , Fanshu Fang , Charo I. del Genio , Stefano Boccaletti

The forecasting and computation of the stability of chaotic systems from partial observations are tasks for which traditional equation-based methods may not be suitable. In this computational paper, we propose data-driven methods to (i)…

Adaptation and Self-Organizing Systems · Physics 2023-09-26 Elise Özalp , Georgios Margazoglou , Luca Magri

Recently, a general data driven numerical framework has been developed for learning and modeling of unknown dynamical systems using fully- or partially-observed data. The method utilizes deep neural networks (DNNs) to construct a model for…

Machine Learning · Computer Science 2022-05-18 Victor Churchill , Dongbin Xiu

This paper proposes a tractable framework to determine key characteristics of non-linear dynamic systems by converting physics-informed neural networks to a mixed integer linear program. Our focus is on power system applications.…

Systems and Control · Electrical Eng. & Systems 2021-04-01 Georgios S. Misyris , Jochen Stiasny , Spyros Chatzivasileiadis

This paper considers the problem of inferring an unknown network of dynamical systems driven by unknown, intrinsic, noise inputs. Equivalently we seek to identify direct causal dependencies among manifest variables only from observations of…

Systems and Control · Computer Science 2014-12-22 David Hayden , Ye Yuan , Jorge Goncalves

Neural signals are characterized by rich temporal and spatiotemporal dynamics that reflect the organization of cortical networks. Theoretical research has shown how neural networks can operate at different dynamic ranges that correspond to…

Neurons and Cognition · Quantitative Biology 2017-07-05 Luca Ambrogioni , Marcel A. J. van Gerven , Eric Maris

A procedure to characterize chaotic dynamical systems with concepts of complex networks is pursued, in which a dynamical system is mapped onto a network. The nodes represent the regions of space visited by the system, while edges represent…

Statistical Mechanics · Physics 2011-12-20 Ernesto P. Borges , Daniel O. Cajueiro , Roberto F. S. Andrade

Discovering the underlying dynamics of complex systems from data is an important practical topic. Constrained optimization algorithms are widely utilized and lead to many successes. Yet, such purely data-driven methods may bring about…

Dynamical Systems · Mathematics 2023-05-17 Nan Chen , Yinling Zhang

We propose a novel method of detecting directed interactions of a general dynamic network from measured data. By repeating random state variable resetting of a target node and appropriately averaging over the measurable data, the pairwise…

Data Analysis, Statistics and Probability · Physics 2018-11-14 Rundong Shi , Changbao Deng , Shihong Wang

Firing patterns in the central nervous system often exhibit strong temporal irregularity and heterogeneity in their time averaged response properties. Previous studies suggested that these properties are outcome of an intrinsic chaotic…

Disordered Systems and Neural Networks · Physics 2015-11-25 Jonathan Kadmon , Haim Sompolinsky
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