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Ecological systems often exhibit complex nonlinear dynamics like oscillations, chaos, and regime shifts. Universal dynamic equations have shown promise in modeling complex dynamics by combining known functional forms with neural networks…

Populations and Evolution · Quantitative Biology 2024-10-15 Jack H. Buckner , Zechariah D. Meunier , Jorge Arroyo-Esquivel , Nathan Fitzpatrick , Ariel Greiner , Lisa C. McManus , James R. Watson

A computer model is described which is used to assess the dynamical complexity of a class of networks of spiking neurons with small-world properties. Networks are constructed by forming an initially segregated set of highly intra-connected…

Biological Physics · Physics 2009-11-13 Murray Shanahan

Determining hidden shared patterns behind dynamic phenomena can be a game-changer in multiple areas of research. Here we present the principles and show a method to identify hidden shared dynamics from time series by a two-module,…

Neural and Evolutionary Computing · Computer Science 2024-12-04 Zsigmond Benkő , Zoltán Somogyvári

Chaotic systems, such as turbulent flows, are ubiquitous in science and engineering. However, their study remains a challenge due to the large range scales, and the strong interaction with other, often not fully understood, physics. As a…

Our ability to manipulate the behavior of complex networks depends on the design of efficient control algorithms and, critically, on the availability of an accurate and tractable model of the network dynamics. While the design of control…

Systems and Control · Electrical Eng. & Systems 2021-04-28 Giacomo Baggio , Danielle S. Bassett , Fabio Pasqualetti

Networks of randomly connected neurons are among the most popular models in theoretical neuroscience. The connectivity between neurons in the cortex is however not fully random, the simplest and most prominent deviation from randomness…

Neurons and Cognition · Quantitative Biology 2018-07-09 Daniel Martí , Nicolas Brunel , Srdjan Ostojic

Complex dynamical systems are prevalent in various domains, but their analysis and prediction are hindered by their high dimensionality and nonlinearity. Dimensionality reduction techniques can simplify the system dynamics by reducing the…

Dynamical Systems · Mathematics 2023-11-28 Chengyi Tu , Ying Fan , Tianyu Shi

A challenging problem in complex networks is the network reconstruction problem from data. This work deals with a class of networks denoted as conserved networks, in which a flow associated with every edge and the flows are conserved at all…

Machine Learning · Computer Science 2020-04-14 Satya Jayadev P. , Shankar Narasimhan , Nirav Bhatt

In applications, an anticipated situation is where the system of interest has never been encountered before and sparse observations can be made only once. Can the dynamics be faithfully reconstructed from the limited observations without…

Machine Learning · Computer Science 2024-10-29 Zheng-Meng Zhai , Jun-Yin Huang , Benjamin D. Stern , Ying-Cheng Lai

Conservation laws are an inherent feature in many systems modeling real world phenomena, in particular, those modeling biological and chemical systems. If the form of the underlying dynamical system is known, linear algebra and algebraic…

Numerical Analysis · Mathematics 2024-03-11 Tracey Oellerich , Maria Emelianenko

Characterizing the emergence of chaotic dynamics of complex networks is an essential task in nonlinear science with potential important applications in many fields such as neural control engineering, microgrid technologies, and ecological…

Adaptation and Self-Organizing Systems · Physics 2024-04-29 Ricardo Chacón , Pedro J. Martínez

Reconstructing the states of the nodes of a dynamical network is a problem of fundamental importance in the study of neuronal and genetic networks. An underlying related problem is that of observability, i.e., identifying the conditions…

Pattern Formation and Solitons · Physics 2017-03-31 Afroza Shirin , Dionicio F. Rios , Francesco Sorrentino

Cardiac arrhythmogenesis is governed by complex electromechanical interactions that are not directly observable in vivo, motivating the development of non-invasive computational approaches for reconstructing three-dimensional activation…

Medical Physics · Physics 2026-03-05 Nathan Dermul , Hans Dierckx

Latent dynamics discovery is challenging in extracting complex dynamics from high-dimensional noisy neural data. Many dimensionality reduction methods have been widely adopted to extract low-dimensional, smooth and time-evolving latent…

Machine Learning · Computer Science 2019-07-02 Qi She , Anqi Wu

Learning complex network dynamics is fundamental for understanding, modeling, and controlling real-world complex systems. Though great efforts have been made to predict the future states of nodes on networks, the capability of capturing…

Social and Information Networks · Computer Science 2025-03-04 Ruikun Li , Huandong Wang , Jinghua Piao , Qingmin Liao , Yong Li

We present a scalable nonparametric Bayesian method to perform network reconstruction from observed functional behavior that at the same time infers the communities present in the network. We show that the joint reconstruction with…

Physics and Society · Physics 2019-09-23 Tiago P. Peixoto

In a complex system, the interactions between individual agents often lead to emergent collective behavior like spontaneous synchronization, swarming, and pattern formation. The topology of the network of interactions can have a dramatic…

Adaptation and Self-Organizing Systems · Physics 2022-07-25 Mark J Panaggio , Maria-Veronica Ciocanel , Lauren Lazarus , Chad M Topaz , Bin Xu

This paper addresses the problem of identifying the topology of an unknown, weighted, directed network running a consensus dynamics. We propose a methodology to reconstruct the network topology from the dynamic response when the system is…

Social and Information Networks · Computer Science 2013-03-18 Shahin Shahrampour , Victor M. Preciado

Identifying a coupled dynamical system out of many plausible candidates, each of which could serve as the underlying generator of some observed measurements, is a profoundly ill posed problem that commonly arises when modelling real world…

Neurons and Cognition · Quantitative Biology 2019-09-17 Amirhossein Jafarian , Peter Zeidman , Vladimir Litvak , Karl Friston

Causal learning from data has received much attention recently. Bayesian networks can be used to capture causal relationships. There, one recovers a weighted directed acyclic graph in which random variables are represented by vertices, and…

Machine Learning · Computer Science 2026-01-06 Pavel Rytir , Ales Wodecki , Georgios Korpas , Jakub Marecek