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BACKGROUND: Radiology reports are typically written in a free-text format, making clinical information difficult to extract and use. Recently the adoption of structured reporting (SR) has been recommended by various medical societies thanks…

Objective: We aim to develop an open-source natural language processing (NLP) package, SODA (i.e., SOcial DeterminAnts), with pre-trained transformer models to extract social determinants of health (SDoH) for cancer patients, examine the…

Natural Language Processing (NLP) is a key technique for developing Medical Artificial Intelligence (AI) systems that leverage Electronic Health Record (EHR) data to build diagnostic and prognostic models. NLP enables the conversion of…

Despite the rapid development of natural language processing (NLP) implementation in electronic medical records (EMRs), Chinese EMRs processing remains challenging due to the limited corpus and specific grammatical characteristics,…

Computation and Language · Computer Science 2020-10-14 Honglei Liu , Yan Xu , Zhiqiang Zhang , Ni Wang , Yanqun Huang , Yanjun Hu , Zhenghan Yang , Rui Jiang , Hui Chen

Of the 2652 articles considered, 106 met the inclusion criteria. Review of the included papers resulted in identification of 43 chronic diseases, which were then further classified into 10 disease categories using ICD-10. The majority of…

Computers and Society · Computer Science 2019-08-19 Seyedmostafa Sheikhalishahi , Riccardo Miotto , Joel T Dudley , Alberto Lavelli , Fabio Rinaldi , Venet Osmani

Radiotherapy (RT) toxicities can impair survival and quality-of-life, yet remain under-studied. Real-world evidence holds potential to improve our understanding of toxicities, but toxicity information is often only in clinical notes. We…

In recent years, Natural Language Processing (NLP) models have achieved phenomenal success in linguistic and semantic tasks like text classification, machine translation, cognitive dialogue systems, information retrieval via Natural…

Computation and Language · Computer Science 2021-05-18 Sushant Singh , Ausif Mahmood

Machine learning models have utilized semantic features, deep features, or both to assess lung nodule malignancy. However, their reliance on manual annotation during inference, limited interpretability, and sensitivity to imaging variations…

Computer Vision and Pattern Recognition · Computer Science 2025-11-04 Luoting Zhuang , Seyed Mohammad Hossein Tabatabaei , Ramin Salehi-Rad , Linh M. Tran , Denise R. Aberle , Ashley E. Prosper , William Hsu

Segmentation of nodules in thyroid ultrasound imaging plays a crucial role in the detection and treatment of thyroid cancer. However, owing to the diversity of scanner vendors and imaging protocols in different hospitals, the automatic…

Image and Video Processing · Electrical Eng. & Systems 2024-01-23 Xuewei Li , Yaqiao Zhu , Jie Gao , Xi Wei , Ruixuan Zhang , Yuan Tian , ZhiQiang Liu

Large language models (LLMs) such as GPT-4o and o1 have demonstrated strong performance on clinical natural language processing (NLP) tasks across multiple medical benchmarks. Nonetheless, two high-impact NLP tasks - structured tabular…

Accurate detection of thyroid lesions is a critical aspect of computer-aided diagnosis. However, most existing detection methods perform only one feature extraction process and then fuse multi-scale features, which can be affected by noise…

Computer Vision and Pattern Recognition · Computer Science 2023-05-25 Lingtao Wang , Jianrui Ding , Fenghe Tang , Chunping Ning

Objective: The majority of detailed patient information in real-world data (RWD) is only consistently available in free-text clinical documents. Manual curation is expensive and time-consuming. Developing natural language processing (NLP)…

Thyroid cancer is said to be the second most common type of cancer in female individuals and the third in males by 2030, according to projections. In general, detecting cancer in its early stages improves the chance of survival of the…

Computer Vision and Pattern Recognition · Computer Science 2026-05-29 J. R. González , É. O. Rodrigues , C. P. Damião , C. A. P. Fontes , A. C. Silva , A. C. Paiva , H. Li , C. Du , A. Conci

Thyroid cancer is a common endocrine carcinoma that occurs in the thyroid gland. Much effort has been invested in improving its diagnosis, and thyroidectomy remains the primary treatment method. A successful operation without unnecessary…

Machine Learning · Computer Science 2022-03-31 Nan Miles Xi , Lin Wang , Chuanjia Yang

Background: Thyroid ultrasound is commonly performed using a combination of static images and cine clips (video recordings). However, the exact utility and impact of cine images remains unknown. This study aimed to evaluate the impact of…

Image and Video Processing · Electrical Eng. & Systems 2026-02-03 Jichen Yang , Brian C. Allen , Kirti Magudia , Lisa M. Ho , Chad M. Miller , Maciej A. Mazurowski , Benjamin Wildman-Tobriner

Background: Structured information extraction from unstructured histopathology reports facilitates data accessibility for clinical research. Manual extraction by experts is time-consuming and expensive, limiting scalability. Large language…

Thyroid ultrasound is the first-line exam for assessing thyroid nodules and determining whether biopsy is warranted. In routine reporting, radiologists produce two coupled outputs: a nodule contour for measurement and a TI-RADS risk…

Computer Vision and Pattern Recognition · Computer Science 2026-03-24 Dina Salama , Mohamed Mahmoud , Nourhan Bayasi , David Liu , Ilker Hacihaliloglu

Extraction of relevant pathological terms from radiology reports is important for correct image label generation and disease population studies. In this letter, we compare the performance of some known application program interface (APIs)…

Information Retrieval · Computer Science 2018-12-08 Tahsin Mostafiz , Khalid Ashraf

Objective: Clinical trials are essential for advancing pharmaceutical interventions, but they face a bottleneck in selecting eligible participants. Although leveraging electronic health records (EHR) for recruitment has gained popularity,…

Computation and Language · Computer Science 2026-01-15 Mojdeh Rahmanian , Seyed Mostafa Fakhrahmad , Seyedeh Zahra Mousavi

The rising rate of drug-related deaths in the United States, largely driven by fentanyl, requires timely and accurate surveillance. However, critical overdose data are often buried in free-text coroner reports, leading to delays and…