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There are a few challenges related to the task of biomedical named entity recognition, which are: the existing methods consider a fewer number of biomedical entities (e.g., disease, symptom, proteins, genes); and these methods do not…

Computation and Language · Computer Science 2022-07-05 Shaina Raza , Brian Schwartz

Knowledge Bases (KBs) are easy to query, verifiable, and interpretable. They however scale with man-hours and high-quality data. Masked Language Models (MLMs), such as BERT, scale with computing power as well as unstructured raw text data.…

Computation and Language · Computer Science 2020-09-16 Louis Clouatre , Philippe Trempe , Amal Zouaq , Sarath Chandar

We present a new local entity disambiguation system. The key to our system is a novel approach for learning entity representations. In our approach we learn an entity aware extension of Embedding for Language Model (ELMo) which we call…

Computation and Language · Computer Science 2019-08-23 Hamed Shahbazi , Xiaoli Z. Fern , Reza Ghaeini , Rasha Obeidat , Prasad Tadepalli

Benefiting from the excellent ability of neural networks on learning semantic representations, existing studies for entity linking (EL) have resorted to neural networks to exploit both the local mention-to-entity compatibility and the…

Computation and Language · Computer Science 2019-06-25 Mengge Xue , Weiming Cai , Jinsong Su , Linfeng Song , Yubin Ge , Yubao Liu , Bin Wang

Existing state of the art neural entity linking models employ attention-based bag-of-words context model and pre-trained entity embeddings bootstrapped from word embeddings to assess topic level context compatibility. However, the latent…

Computation and Language · Computer Science 2020-01-07 Shuang Chen , Jinpeng Wang , Feng Jiang , Chin-Yew Lin

In this work, we formulate the NER task as a multi-answer knowledge guided QA task (KGQA) which helps to predict entities only by assigning B, I and O tags without associating entity types with the tags. We provide different knowledge…

Computation and Language · Computer Science 2020-09-21 Pratyay Banerjee , Kuntal Kumar Pal , Murthy Devarakonda , Chitta Baral

We describe a neural network model that jointly learns distributed representations of texts and knowledge base (KB) entities. Given a text in the KB, we train our proposed model to predict entities that are relevant to the text. Our model…

Computation and Language · Computer Science 2017-11-08 Ikuya Yamada , Hiroyuki Shindo , Hideaki Takeda , Yoshiyasu Takefuji

Knowledge-based entity prediction (KEP) is a novel task that aims to improve machine perception in autonomous systems. KEP leverages relational knowledge from heterogeneous sources in predicting potentially unrecognized entities. In this…

Artificial Intelligence · Computer Science 2022-06-10 Ruwan Wickramarachchi , Cory Henson , Amit Sheth

Entity Linking aims to link entity mentions in texts to knowledge bases, and neural models have achieved recent success in this task. However, most existing methods rely on local contexts to resolve entities independently, which may usually…

Computation and Language · Computer Science 2018-11-22 Yixin Cao , Lei Hou , Juanzi Li , Zhiyuan Liu

Entity disambiguation (ED), which links the mentions of ambiguous entities to their referent entities in a knowledge base, serves as a core component in entity linking (EL). Existing generative approaches demonstrate improved accuracy…

Computation and Language · Computer Science 2024-05-09 Junxiong Wang , Ali Mousavi , Omar Attia , Ronak Pradeep , Saloni Potdar , Alexander M. Rush , Umar Farooq Minhas , Yunyao Li

This technical report introduces a Named Clinical Entity Recognition Benchmark for evaluating language models in healthcare, addressing the crucial natural language processing (NLP) task of extracting structured information from clinical…

Weak supervision has shown promising results in many natural language processing tasks, such as Named Entity Recognition (NER). Existing work mainly focuses on learning deep NER models only with weak supervision, i.e., without any human…

Computation and Language · Computer Science 2021-08-03 Haoming Jiang , Danqing Zhang , Tianyu Cao , Bing Yin , Tuo Zhao

Biomedical entity linking and event extraction are two crucial tasks to support text understanding and retrieval in the biomedical domain. These two tasks intrinsically benefit each other: entity linking disambiguates the biomedical…

Computation and Language · Computer Science 2023-05-25 Xiaochu Li , Minqian Liu , Zhiyang Xu , Lifu Huang

Named Entity Recognition (NER) and Entity Linking (EL) play an essential role in voice assistant interaction, but are challenging due to the special difficulties associated with spoken user queries. In this paper, we propose a novel…

We propose yet another entity linking model (YELM) which links words to entities instead of spans. This overcomes any difficulties associated with the selection of good candidate mention spans and makes the joint training of mention…

Computation and Language · Computer Science 2020-11-10 Haotian Chen , Andrej Zukov-Gregoric , Xi David Li , Sahil Wadhwa

Neural entity linking models are very powerful, but run the risk of overfitting to the domain they are trained in. For this problem, a domain is characterized not just by genre of text but even by factors as specific as the particular…

Computation and Language · Computer Science 2020-01-09 Yasumasa Onoe , Greg Durrett

Some Question Answering (QA) systems rely on knowledge bases (KBs) to provide accurate answers. Entity Linking (EL) plays a critical role in linking natural language mentions to KB entries. However, most existing EL methods are designed for…

Computation and Language · Computer Science 2026-05-22 Yajie Luo , Yihong Wu , Muzhi Li , Jia Ao Sun , Xinyu Wang , Liheng Ma , Yingxue Zhang , Jian-Yun Nie

A significant shortcoming of current state-of-the-art (SOTA) named-entity recognition (NER) systems is their lack of generalization to unseen domains, which poses a major problem since obtaining labeled data for NER in a new domain is…

Artificial Intelligence · Computer Science 2021-11-16 Nguyen Van Hoang , Soeren Hougaard Mulvad , Dexter Neo Yuan Rong , Yang Yue

Entity linking aims to link ambiguous mentions to their corresponding entities in a knowledge base, which is significant and fundamental for various downstream applications, e.g., knowledge base completion, question answering, and…

Computation and Language · Computer Science 2022-07-20 Xiuxing Li , Zhenyu Li , Zhengyan Zhang , Ning Liu , Haitao Yuan , Wei Zhang , Zhiyuan Liu , Jianyong Wang

Pre-trained language models (PLMs) were considered to be able to store relational knowledge present in the training data. However, some relational knowledge seems to be discarded unsafely in PLMs due to \textbf{report bias}: low-frequency…

Computation and Language · Computer Science 2023-05-25 Hongbo Zhang , Xiang Wan , Benyou Wang