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Retrieval-augmented generation (RAG) has proven effective in integrating knowledge into large language models (LLMs). However, conventional RAGs struggle to capture complex relationships between pieces of knowledge, limiting their…

Information Retrieval · Computer Science 2025-12-12 Linhao Luo , Zicheng Zhao , Gholamreza Haffari , Dinh Phung , Chen Gong , Shirui Pan

Graph Neural Networks (GNNs) are deep learning models that take graph data as inputs, and they are applied to various tasks such as traffic prediction and molecular property prediction. However, owing to the complexity of the GNNs, it has…

Machine Learning · Computer Science 2021-11-02 Tetsu Kasanishi , Xueting Wang , Toshihiko Yamasaki

Graph Neural Networks (GNNs) have become essential in high-stakes domains such as drug discovery, yet their black-box nature remains a significant barrier to trustworthiness. While self-explainable GNNs attempt to bridge this gap, they…

Machine Learning · Computer Science 2026-02-25 Chuqin Geng , Li Zhang , Haolin Ye , Ziyu Zhao , Yuhe Jiang , Tara Saba , Xinyu Wang , Xujie Si

In precision medicine, quantitative multi-omic features, topological context, and textual biological knowledge play vital roles in identifying disease-critical signaling pathways and targets. Existing pipelines capture only part of…

Artificial Intelligence · Computer Science 2025-12-17 Heming Zhang , Di Huang , Wenyu Li , Michael Province , Yixin Chen , Philip Payne , Fuhai Li

The recommendation system is not only a problem of inductive statistics from data but also a cognitive task that requires reasoning ability. The most advanced graph neural networks have been widely used in recommendation systems because…

Artificial Intelligence · Computer Science 2023-07-12 Bang Chen , Wei Peng , Maonian Wu , Bo Zheng , Shaojun Zhu

Boolean circuit is a computational graph that consists of the dynamic directed graph structure and static functionality. The commonly used logic optimization and Boolean matching-based transformation can change the behavior of the Boolean…

Machine Learning · Computer Science 2024-11-19 Liwei Ni , Xinquan Li , Biwei Xie , Huawei Li

Graph-based retrieval-augmented generation (Graph-based RAG) has demonstrated significant potential in enhancing Large Language Models (LLMs) with structured knowledge. However, existing methods face three critical challenges: Inaccurate…

Machine Learning · Computer Science 2026-03-18 Yubo Wang , Haoyang Li , Fei Teng , Lei Chen

The use of knowledge graphs for grounding agents in real-world Q&A applications has become increasingly common. Answering complex queries often requires multi-hop reasoning and the ability to navigate vast relational structures. Standard…

Artificial Intelligence · Computer Science 2026-04-03 Taraneh Ghandi , Hamidreza Mahyar , Shachar Klaiman

Clinical AI adoption is hindered by the black-box/grey-box nature of high-performing models, which lack the ontological grounding and narrative transparency required for professional-level explainability. We present NEURON, a neuro-symbolic…

Artificial Intelligence · Computer Science 2026-05-05 Anuradha Chandrasekaran , Dimitrios Zikos , Mutlu Mete , Alan Pang , Brady D. Lund , Kewei Sha

Boolean algebraic manipulation is at the core of logic synthesis in Electronic Design Automation (EDA) design flow. Existing methods struggle to fully exploit optimization opportunities, and often suffer from an explosive search space and…

Hardware Architecture · Computer Science 2024-01-22 Yingjie Li , Anthony Agnesina , Yanqing Zhang , Haoxing Ren , Cunxi Yu

Graph Neural Networks (GNNs) are non-Euclidean deep learning models for graph-structured data. Despite their successful and diverse applications, oversmoothing prohibits deep architectures due to node features converging to a single fixed…

Machine Learning · Computer Science 2024-12-06 Arseny Skryagin , Felix Divo , Mohammad Amin Ali , Devendra Singh Dhami , Kristian Kersting

Using Large Language Models (LLMs) to process graph-structured data is an active research area, yet current state-of-the-art approaches typically rely on multi-step pipelines with Graph Neural Network (GNN) encoders that compress rich…

Machine Learning · Computer Science 2026-05-12 Dario Vajda

Uncovering rationales behind predictions of graph neural networks (GNNs) has received increasing attention over recent years. Instance-level GNN explanation aims to discover critical input elements, like nodes or edges, that the target GNN…

Machine Learning · Computer Science 2022-12-20 Tianxiang Zhao , Dongsheng Luo , Xiang Zhang , Suhang Wang

Despite the recent successes of deep neural networks in various fields such as image and speech recognition, natural language processing, and reinforcement learning, we still face big challenges in bringing the power of numeric optimization…

Artificial Intelligence · Computer Science 2018-02-16 Fei Wang , Tiark Rompf

Graph Neural Networks (GNNs) have become essential tools for analyzing graph-structured data in domains such as drug discovery and financial analysis, leading to growing demands for model transparency. Recent advances in explainable GNNs…

Machine Learning · Computer Science 2025-06-04 Bin Ma , Yuyuan Feng , Minhua Lin , Enyan Dai

Logistics optimization nowadays is becoming one of the hottest areas in the AI community. In the past year, significant advancements in the domain were achieved by representing the problem in a form of graph. Another promising area of…

Machine Learning · Computer Science 2022-05-26 Zangir Iklassov , Dmitrii Medvedev

Graph Neural Networks (GNNs) have demonstrated remarkable proficiency in handling a range of graph analytical tasks across various domains, such as e-commerce and social networks. Despite their versatility, GNNs face significant challenges…

Machine Learning · Computer Science 2025-01-08 Zhe-Rui Yang , Jindong Han , Chang-Dong Wang , Hao Liu

Graph Retrieval Augmented Generation (GraphRAG) effectively enhances external knowledge integration capabilities by explicitly modeling knowledge relationships, thereby improving the factual accuracy and generation quality of Large Language…

Artificial Intelligence · Computer Science 2025-06-05 Junqi Gao , Xiang Zou , YIng Ai , Dong Li , Yichen Niu , Biqing Qi , Jianxing Liu

Large Language Models (LLMs) have achieved impressive results in processing text data, which has sparked interest in applying these models beyond textual data, such as graphs. In the field of graph learning, there is a growing interest in…

Artificial Intelligence · Computer Science 2024-10-10 Sheng Ouyang , Yulan Hu , Ge Chen , Yong Liu

Algorithmic reasoning -- the ability to perform step-by-step logical inference -- has become a core benchmark for evaluating reasoning in graph neural networks (GNNs) and large language models (LLMs). Ideally, one would like to design a…

Machine Learning · Computer Science 2025-12-02 Dongyue Li , Zhenshuo Zhang , Minxuan Duan , Edgar Dobriban , Hongyang R. Zhang