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Bootstrapping is a popular and computationally demanding resampling method used for measuring the accuracy of sample estimates and assisting with statistical inference. R is a freely available language and environment for statistical…

Computation · Statistics 2014-01-27 T. M. Sloan , M. Piotrowski , T. Forster , P. Ghazal

Parcellations are fundamental tools in neuroanatomy, allowing researchers to place functional imaging and molecular data within a structural context in the brain. Visualizing these parcellations is critical to guide biological understanding…

Tissues and Organs · Quantitative Biology 2022-01-26 Giuseppe A. D'Agostino , Sarah R. Langley

This document contains the mathematical introduction to RORPack - a Python software library for robust output tracking and disturbance rejection for linear PDE systems. The RORPack library is open-source and freely available at…

Optimization and Control · Mathematics 2019-02-27 Lassi Paunonen

Remote Procedure Call (RPC) is a communication protocol to support client-server interactions among services over a network. RPC is widely applied in industry for building large-scale distributed systems, such as Microservices. Modern RPC…

Software Engineering · Computer Science 2023-02-06 Man Zhang , Andrea Arcuri , Yonggang Li , Yang Liu , Kaiming Xue

This paper presents the philosophy, design and feature-set of Neural Network Distiller, an open-source Python package for DNN compression research. Distiller is a library of DNN compression algorithms implementations, with tools, tutorials…

Machine Learning · Computer Science 2019-10-29 Neta Zmora , Guy Jacob , Lev Zlotnik , Bar Elharar , Gal Novik

Increased application of multivariate data in many scientific areas has considerably raised the complexity of analysis and interpretation. Although quite a few approaches have been put forward to address this issue, there is still a gap…

Computation · Statistics 2018-10-30 Elyas Heidari , Vahid Balazadeh-Meresht , Ali Sharifi-Zarchi

Computational reproducibility of scientific results, that is, the execution of a computational experiment (e.g., a script) using its original settings (data, code, etc.), should always be possible. However, reproducibility has become a…

Human-Computer Interaction · Computer Science 2025-04-15 Lázaro Costa , Susana Barbosa , Jácome Cunha

The dirichletprocess package provides software for creating flexible Dirichlet process objects. Users can perform nonparametric Bayesian analysis using Dirichlet processes without the need to program their own inference algorithms. Instead,…

Computation · Statistics 2026-05-05 Gordon J. Ross , Dean Markwick , Priyanshu Tiwari

Containers are an emerging technology that hold promise for improving productivity and code portability in scientific computing. We examine Linux container technology for the distribution of a non-trivial scientific computing software stack…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-06-19 Jack S. Hale , Lizao Li , Chris N. Richardson , Garth N. Wells

This short paper gives an introduction to the \emph{rcss} package. The R package \emph{rcss} provides users with a tool to approximate the value functions in the Bellman recursion using convex piecewise linear functions formed using…

Mathematical Software · Computer Science 2018-01-19 Juri Hinz , Jeremy Yee

Context: Experiment replications play a central role in the scientific method. Although software engineering experimentation has matured a great deal, the number of experiment replications is still relatively small. Software engineering…

Software Engineering · Computer Science 2024-02-13 Martín Solari , Sira Vegas , Natalia Juristo

We introduce Docling, an easy-to-use, self-contained, MIT-licensed, open-source toolkit for document conversion, that can parse several types of popular document formats into a unified, richly structured representation. It is powered by…

DiRAC is a scalable, distributed framework designed to enable efficient task assignment and path planning in very large robotic swarms. It introduces a novel zone-partitioned architecture with dynamically elected leaders and a…

Multiagent Systems · Computer Science 2025-10-21 Uday Gopan , Manjari Kulkarni , Lakshasri S , Kashish Mittal , Sriram Radhakrishna , Aditya Naskar , Rameshwar DL

Docker images are composed of multiple layers, each of which contains a set of instructions, and an archive of files. Layers allow Docker to separate a large build task into smaller ones, such that when a part of the program is changed,…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-11-26 Yujing Wang , Qinyang Bao

Computational micromagnetics requires numerical solution of partial differential equations to resolve complex interactions in magnetic nanomaterials. The Virtual Micromagnetics project described here provides virtual machine simulation…

Other Computer Science · Computer Science 2016-11-28 Mark Vousden , Marc-Antonio Bisotti , Maximilian Albert , Hans Fangohr

Ensuring the reproducibility of scientific work is crucial as it allows the consistent verification of scientific claims and facilitates the advancement of knowledge by providing a reliable foundation for future research. However,…

Software Engineering · Computer Science 2025-04-14 Lázaro Costa , Susana Barbosa , Jácome Cunha

In this article, we present a recently released R package for Bayesian calibration. Many industrial fields are facing unfeasible or costly field experiments. These experiments are replaced with numerical/computer experiments which are…

Computation · Statistics 2018-08-30 Mathieu Carmassi , Pierre Barbillon , Matthieu Chiodetti , Merlin Keller , Eric Parent

We present RKappa, a framework for the development and analysis of rule-based models within a mature, statistically empowered R environment. The infrastructure allows model editing, modification, parameter sampling, simulation, statistical…

Molecular Networks · Quantitative Biology 2014-12-16 Anatoly Sorokin , Oksana Sorokina , J. Douglas Armstrong

We introduce Perceval, an open-source software platform for simulating and interfacing with discrete-variable photonic quantum computers, and describe its main features and components. Its Python front-end allows photonic circuits to be…

FRK is an R software package for spatial/spatio-temporal modelling and prediction with large datasets. It facilitates optimal spatial prediction (kriging) on the most commonly used manifolds (in Euclidean space and on the surface of the…

Computation · Statistics 2018-06-11 Andrew Zammit-Mangion , Noel Cressie
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