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We study the widely used hierarchical agglomerative clustering (HAC) algorithm on edge-weighted graphs. We define an algorithmic framework for hierarchical agglomerative graph clustering that provides the first efficient $\tilde{O}(m)$ time…

Data Structures and Algorithms · Computer Science 2021-06-11 Laxman Dhulipala , David Eisenstat , Jakub Łącki , Vahab Mirrokni , Jessica Shi

Convex clustering is a modern clustering framework that guarantees globally optimal solutions and performs comparably to other advanced clustering methods. However, obtaining a complete dendrogram (clusterpath) for large-scale datasets…

Machine Learning · Computer Science 2025-04-01 Bingyuan Zhang , Yoshikazu Terada

In this paper, we address the problem of recovering arbitrary-shaped data clusters from datasets while facing \emph{high space constraints}, as this is for instance the case in many real-world applications when analysis algorithms are…

Machine Learning · Computer Science 2018-05-29 Anne Morvan , Krzysztof Choromanski , Cédric Gouy-Pailler , Jamal Atif

We describe an approach to parallel graph partitioning that scales to hundreds of processors and produces a high solution quality. For example, for many instances from Walshaw's benchmark collection we improve the best known partitioning.…

Distributed, Parallel, and Cluster Computing · Computer Science 2010-04-08 Manuel Holtgrewe , Peter Sanders , Christian Schulz

Graph clustering is a fundamental computational problem with a number of applications in algorithm design, machine learning, data mining, and analysis of social networks. Over the past decades, researchers have proposed a number of…

Data Structures and Algorithms · Computer Science 2017-11-06 He Sun , Luca Zanetti

Motivated by applications in social and biological network analysis, we introduce a new form of agnostic clustering termed~\emph{motif correlation clustering}, which aims to minimize the cost of clustering errors associated with both edges…

Data Structures and Algorithms · Computer Science 2018-11-07 Pan Li , Gregory J. Puleo , Olgica Milenkovic

Current graph systems can easily process billions of data, however when increased to exceed hundred billions, the performance decreases dramatically, time series data always be very huge, consequently computation on time series graphs still…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-10-25 Derong Tang

Optimizing the parallel training of large models requires exploring intra-operator parallelism plans for a computation graph that typically contains tens of thousands of primitive operators. While the optimization of parallel data…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-07-08 Weifang Hu , Xuanhua Shi , Yunkai Zhang , Chang Wu , Xuan Peng , Jiaqi Zhai , Hai Jin , Xuehai Qian , Jingling Xue , Yongluan Zhou

Probabilistic breadth-first traversals (BPTs) are used in many network science and graph machine learning applications. In this paper, we are motivated by the application of BPTs in stochastic diffusion-based graph problems such as…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-06-21 Reece Neff , Mostafa Eghbali Zarch , Marco Minutoli , Mahantesh Halappanavar , Antonino Tumeo , Ananth Kalyanaraman , Michela Becchi

Hierarchical clustering is a recursive partitioning of a dataset into clusters at an increasingly finer granularity. Motivated by the fact that most work on hierarchical clustering was based on providing algorithms, rather than optimizing a…

Data Structures and Algorithms · Computer Science 2017-04-10 Vincent Cohen-Addad , Varun Kanade , Frederik Mallmann-Trenn , Claire Mathieu

Computing fixed-radius near-neighbor graphs is an important first step for many data analysis algorithms. Near-neighbor graphs connect points that are close under some metric, endowing point clouds with a combinatorial structure. As…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-10-17 Gabriel Raulet , Dmitriy Morozov , Aydin Buluc , Katherine Yelick

Traditional clustering algorithms often focus on the most fine-grained information and achieve clustering by calculating the distance between each pair of data points or implementing other calculations based on points. This way is not…

Machine Learning · Computer Science 2024-10-21 Shuyin Xia , Bolun Shi , Yifan Wang , Jiang Xie , Guoyin Wang , Xinbo Gao

Federated multi-view clustering has been proposed to mine the valuable information within multi-view data distributed across different devices and has achieved impressive results while preserving the privacy. Despite great progress, most…

Machine Learning · Computer Science 2025-06-23 Guoqing Chao , Zhenghao Zhang , Lei Meng , Jie Wen , Dianhui Chu

Graphs are central to modeling relationships in scientific computing, data analysis, and AI/ML, but their growing scale can exceed the memory and compute capacity of single nodes, requiring distributed solutions. Existing distributed graph…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-01-27 Karame Mohammadiporshokooh , Panagiotis Syskakis , Hartmut Kaiser

The Reeb graph of a scalar function defined on a domain gives a topologically meaningful summary of that domain. Reeb graphs have been shown in the past decade to be of great importance in geometric processing, image processing, computer…

Computational Geometry · Computer Science 2020-10-13 Mustafa Hajij , Paul Rosen

When processing a batch of graphs in machine learning models such as Graph Neural Networks (GNN), it is common to combine several small graphs into one overall graph to accelerate processing and remove or reduce the overhead of padding.…

Machine Learning · Computer Science 2022-09-20 Mario Michael Krell , Manuel Lopez , Sreenidhi Anand , Hatem Helal , Andrew William Fitzgibbon

One of the biggest huddles faced by researchers studying algorithms for massive graphs is the lack of large input graphs that are essential for the development and test of the graph algorithms. This paper proposes two efficient and highly…

Distributed, Parallel, and Cluster Computing · Computer Science 2010-03-22 Andy Yoo , Keith Henderson

Recommender systems serve a dual purpose for users: sifting out inappropriate or mismatched information while accurately identifying items that align with their preferences. Numerous recommendation algorithms are designed to provide users…

Information Retrieval · Computer Science 2024-02-27 Chaoguang Luo , Liuying Wen , Yong Qin , Liangwei Yang , Zhineng Hu , Philip S. Yu

Best match graphs (BMGs) are a class of colored digraphs that naturally appear in mathematical phylogenetics and can be approximated with the help of similarity measures between gene sequences, albeit not without errors. The corresponding…

Combinatorics · Mathematics 2021-03-15 David Schaller , Manuela Geiß , Marc Hellmuth , Peter F. Stadler

In this work, we study the problem of partitioning a set of graphs into different groups such that the graphs in the same group are similar while the graphs in different groups are dissimilar. This problem was rarely studied previously,…

Machine Learning · Computer Science 2023-02-07 Jinyu Cai , Yi Han , Wenzhong Guo , Jicong Fan