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We numerically model a two-dimensional active nematic confined by a periodic array of fixed obstacles. Even in the passive nematic, the appearance of topological defects is unavoidable due to planar anchoring by the obstacle surfaces. We…

Soft Condensed Matter · Physics 2024-01-25 Cody D. Schimming , C. J. O. Reichhardt , C. Reichhardt

The field of active nematics has traditionally employed descriptions based on dipolar activity, with interactions that align along a single axis. However, it has been theoretically predicted that interactions with a substrate, prevalent in…

We study the dynamics of topological defects in active nematic films with spatially-varying activity and consider two setups: i) a constant activity gradient, and ii) a sharp jump in activity. A constant gradient of extensile (contractile)…

Soft Condensed Matter · Physics 2022-09-02 Jonas Rønning , M. Cristina Marchetti , Luiza Angheluta

Motion is a dominant cue in automated driving systems. Optical flow is typically computed to detect moving objects and to estimate depth using triangulation. In this paper, our motivation is to leverage the existing dense optical flow to…

Computer Vision and Pattern Recognition · Computer Science 2019-01-23 Hazem Rashed , Senthil Yogamani , Ahmad El-Sallab , Pavel Krizek , Mohamed El-Helw

It is known from grand canonical simulations of a system of hard rods on two dimensional lattices that an orientationally ordered nematic phase exists only when the length of the rods is at least seven. However, a recent microcanonical…

Soft Condensed Matter · Physics 2018-02-14 Saugata Patra , Dibyendu Das , R. Rajesh , Mithun K. Mitra

Active nematics are the nonequilibrium analog of passive liquid crystals in which anisotropic units consume free energy to drive emergent behavior. Similar to liquid crystal (LC) molecules in displays, ordering and dynamics in active…

Quantitative Methods · Quantitative Biology 2022-10-10 Japinder Nijjer , Mrityunjay Kothari , Changhao Li , Thomas Henzel , Qiuting Zhang , Jung-Shen B. Tai , Shuang Zhou , Sulin Zhang , Tal Cohen , Jing Yan

We perform dynamical simulations of a two-dimensional active nematic fluid in coexistence with an isotropic fluid. Drops of active nematic become elongated, and an effective anchoring develops at the nematic-isotropic interface. The…

Soft Condensed Matter · Physics 2014-12-17 Matthew L. Blow , Sumesh P. Thampi , Julia M. Yeomans

A nematic liquid crystal confined to the surface of a sphere exhibits topological defects of total charge $+2$ due to the topological constraint. In equilibrium, the nematic field forms four $+1/2$ defects, located at the corners of a…

Soft Condensed Matter · Physics 2020-07-22 Yi-Heng Zhang , Markus Deserno , Zhan-Chun Tu

Active fluids, such as cytoskeletal filaments, bacterial colonies and epithelial cell layers, exhibit distinctive orientational coherence, often characterized by nematic order and topological defects. By contrast, little is known about…

Soft Condensed Matter · Physics 2021-04-07 Mattia Serra , Linnea Lemma , Luca Giomi , Zvonimir Dogic , L. Mahadevan

Active fluids refer to the fluids that contain self-propelled particles such as bacteria or micro-algae, whose properties differ fundamentally from the passive fluids. Such particles often exhibit an intermittent motion, with high-motility…

Biological Physics · Physics 2020-03-05 Thomas Vourc'h , Julien Léopoldès , Hassan Peerhossaini

We measure the defect density as a function of time at different temperatures in simulations of a two dimensional system of interacting particles. Just above the solid to liquid transition temperature, the power spectrum of the defect…

Soft Condensed Matter · Physics 2009-11-07 C. Reichhardt , C. J. Olson Reichhardt

The actin cytoskeleton of cells is in continuous motion due to both polymerization of new filaments and their contraction by myosin II molecular motors. Through adhesion to the substrate, such intracellular flow can be converted into cell…

Subcellular Processes · Quantitative Biology 2021-08-11 Oliver M. Drozdowski , Falko Ziebert , Ulrich S. Schwarz

Achieving control and tunability of lyotropic materials has been a long-standing goal of liquid crystal research. Here we show that the elasticity of a liquid crystal system consisting of a dense suspension of semiflexible biopolymers can…

Soft Condensed Matter · Physics 2018-01-12 Rui Zhang , Nitin Kumar , Jennifer Ross , Margaret L. Gardel , Juan J. de Pablo

We investigate the formation of a new class of density-phase defects in a resonantly driven 2D quantum fluid of light. The system bistability allows the formation of low density regions containing density-phase singularities confined…

Mesoscale and Nanoscale Physics · Physics 2020-01-30 S. V. Koniakhin , O. Bleu , D. D. Stupin , S. Pigeon , A. Maitre , F. Claude , G. Lerario , Q. Glorieux , A. Bramati , D. Solnyshkov , G. Malpuech

The combination of large per-photon optical force and small motional mass attainable in nanocavity optomechanical systems results in strong dynamical back-action between mechanical motion and the cavity light field. In this work we study…

Dense active systems are widespread in nature, examples range from bacterial colonies to biological tissues. Dense clusters of active particles can be obtained by increasing the packing fraction of the system or taking advantage of a…

Soft Condensed Matter · Physics 2022-04-13 Matteo Paoluzzi , Demian Levis , Ignacio Pagonabarraga

Living systems are capable of locomotion, reconfiguration, and replication. To perform these tasks, cells spatiotemporally coordinate the interactions of force-generating, "active" molecules that create and manipulate non-equilibrium…

Soft Condensed Matter · Physics 2019-08-28 Tyler D. Ross , Heun Jin Lee , Zijie Qu , Rachel A. Banks , Rob Phillips , Matt Thomson

Nature has developed striking light-powered proteins such as bacteriorhodopsin, which can convert light energy into conformational changes for biological functions. Such natural machines are a great source of inspiration for creation of…

The hindered diffusion model is introduced. It is a continuum model giving the dynamics of a conserved density. Similar to the spin-facilitated models, the kinetics are hindered by a fluctuating diffusion coefficient that decreases as the…

Statistical Mechanics · Physics 2007-05-23 Gene F Mazenko

We investigate photo-responsive structure formation in a minimal model of dry active nematics. Combining microscopic simulations with the analysis of the corresponding hydrodynamic theory, we show that the system generically self-assembles…

Soft Condensed Matter · Physics 2026-05-29 Giuseppe Fava , Francesco Ginelli , Benoît Mahault