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We introduce Brain-JEPA, a brain dynamics foundation model with the Joint-Embedding Predictive Architecture (JEPA). This pioneering model achieves state-of-the-art performance in demographic prediction, disease diagnosis/prognosis, and…

Cortical surface registration plays a crucial role in aligning cortical functional and anatomical features across individuals. However, conventional registration algorithms are computationally inefficient. Recently, learning-based…

Image and Video Processing · Electrical Eng. & Systems 2023-07-04 Jianxun Ren , Ning An , Youjia Zhang , Danyang Wang , Zhenyu Sun , Cong Lin , Weigang Cui , Weiwei Wang , Ying Zhou , Wei Zhang , Qingyu Hu , Ping Zhang , Dan Hu , Danhong Wang , Hesheng Liu

Continual learning aims to learn multiple tasks sequentially while preserving prior knowledge, but faces the challenge of catastrophic forgetting when adapting to new tasks. Recently, approaches leveraging pre-trained models have gained…

Computer Vision and Pattern Recognition · Computer Science 2025-11-12 Quan Cheng , Yuanyu Wan , Lingyu Wu , Chenping Hou , Lijun Zhang

The proliferation of location-based services has led to massive spatial data generation. Spatial join is a crucial database operation that identifies pairs of objects from two spatial datasets based on spatial relationships. Due to the…

Databases · Computer Science 2025-04-03 Yongyi Liu , Ahmed Mahmood , Amr Magdy , Minyao Zhu

Structural and functional neuroimaging modalities provide complementary windows into brain organization: structural imaging characterizes neural tissue anatomy and microstructure, while functional imaging captures dynamic patterns of neural…

Methodology · Statistics 2026-03-24 Sakul Mahat , Sharmistha Guha , Jessica Bernard

We propose a coercive approach to simultaneously register and segment multi-modal images which share similar spatial structure. Registration is done at the region level to facilitate data fusion while avoiding the need for interpolation.…

Computer Vision and Pattern Recognition · Computer Science 2015-11-19 Yu-Hui Chen , Dennis Wei , Gregory Newstadt , Jeffrey Simmons , Alfred Hero

Tracking microsctructural changes in the developing brain relies on accurate inter-subject image registration. However, most methods rely on either structural or diffusion data to learn the spatial correspondences between two or more…

Image and Video Processing · Electrical Eng. & Systems 2020-05-15 Irina Grigorescu , Alena Uus , Daan Christiaens , Lucilio Cordero-Grande , Jana Hutter , A. David Edwards , Joseph V. Hajnal , Marc Modat , Maria Deprez

The correlation matrix is a central representation of functional brain networks in neuroimaging. Traditional analyses often treat pairwise interactions independently in a Euclidean setting, overlooking the intrinsic geometry of correlation…

Machine Learning · Statistics 2025-04-10 Kisung You , Yelim Lee , Hae-Jeong Park

Multimodal image registration is a challenging but essential step for numerous image-guided procedures. Most registration algorithms rely on the computation of complex, frequently non-differentiable similarity metrics to deal with the…

Computer Vision and Pattern Recognition · Computer Science 2023-07-20 Matteo Ronchetti , Wolfgang Wein , Nassir Navab , Oliver Zettinig , Raphael Prevost

Current sparse autoencoder (SAE) approaches to neural network interpretability assume that activations can be decomposed through linear superposition into sparse, interpretable features. Despite high reconstruction fidelity, SAEs…

Neurons and Cognition · Quantitative Biology 2025-12-10 Omar Claflin

A central issue in neural recording is that of distinguishing the activities of many neurons. Here, we develop a framework, based on Fisher information, to quantify how separable a neuron's activity is from the activities of nearby neurons.…

Multimodal learning leverages complementary information derived from different modalities, thereby enhancing performance in medical image segmentation. However, prevailing multimodal learning methods heavily rely on extensive well-annotated…

Computer Vision and Pattern Recognition · Computer Science 2024-09-05 Xiaogen Zhou , Yiyou Sun , Min Deng , Winnie Chiu Wing Chu , Qi Dou

The integration of human emotions into multimedia applications shows great potential for enriching user experiences and enhancing engagement across various digital platforms. Unlike traditional methods such as questionnaires, facial…

Human-Computer Interaction · Computer Science 2024-04-16 Qile Liu , Zhihao Zhou , Jiyuan Wang , Zhen Liang

The extent to which different neural or artificial neural networks (models) rely on equivalent representations to support similar tasks remains a central question in neuroscience and machine learning. Prior work has typically compared…

Neurons and Cognition · Quantitative Biology 2026-04-06 Jialin Wu , Shreya Saha , Yiqing Bo , Meenakshi Khosla

Medical image registration is a challenging task involving the estimation of spatial transformations to establish anatomical correspondence between pairs or groups of images. Recently, deep learning-based image registration methods have…

Computer Vision and Pattern Recognition · Computer Science 2022-11-28 Xiang Chen , Yan Xia , Nishant Ravikumar , Alejandro F Frangi

Surface reconstruction from magnetic resonance (MR) imaging data is indispensable in medical image analysis and clinical research. A reliable and effective reconstruction tool should: be fast in prediction of accurate well localised and…

Computer Vision and Pattern Recognition · Computer Science 2020-11-22 Katarína Tóthová , Sarah Parisot , Matthew Lee , Esther Puyol-Antón , Andrew King , Marc Pollefeys , Ender Konukoglu

Since gyri and sulci, two basic anatomical building blocks of cortical folding patterns, were suggested to bear different functional roles, a precise mapping from brain function to gyro-sulcal patterns can provide profound insights into…

Neurons and Cognition · Quantitative Biology 2022-05-24 Li Yang , Zhibin He , Changhe Li , Junwei Han , Dajiang Zhu , Tianming Liu , Tuo Zhang

Coronary computed tomography angiography (CCTA) provides 3D information on obstructive coronary artery disease, but cannot fully visualize high-resolution features within the vessel wall. Intravascular imaging, in contrast, can spatially…

Image and Video Processing · Electrical Eng. & Systems 2025-09-10 Karim Kadry , Abhishek Karmakar , Andreas Schuh , Kersten Peterson , Michiel Schaap , David Marlevi , Charles Taylor , Elazer Edelman , Farhad Nezami

The amount of biomedical data continues to grow rapidly. However, the ability to analyze these data is limited due to privacy and regulatory concerns. Machine learning approaches that require data to be copied to a single location are…

Machine Learning · Computer Science 2021-02-18 Dimitris Stripelis , Jose Luis Ambite , Pradeep Lam , Paul Thompson

The human cerebral cortex has many bumps and grooves called gyri and sulci. Even though there is a high inter-individual consistency for the main cortical folds, this is not the case when we examine the exact shapes and details of the…

Machine Learning · Computer Science 2024-02-01 Aymeric Gaudin , Louise Guillon , Clara Fischer , Arnaud Cachia , Denis Rivière , Jean-François Mangin , Joël Chavas