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Motivated by an application from geodesy, we introduce a novel clustering problem which is a $k$-center (or k-diameter) problem with a side constraint. For the side constraint, we are given an undirected connectivity graph $G$ on the input…

Data Structures and Algorithms · Computer Science 2023-10-19 Lukas Drexler , Jan Eube , Kelin Luo , Dorian Reineccius , Heiko Röglin , Melanie Schmidt , Julian Wargalla

Graph clustering is a basic technique in machine learning, and has widespread applications in different domains. While spectral techniques have been successfully applied for clustering undirected graphs, the performance of spectral…

Machine Learning · Computer Science 2019-08-07 Mihai Cucuringu , Huan Li , He Sun , Luca Zanetti

The level set tree approach of Hartigan (1975) provides a probabilistically based and highly interpretable encoding of the clustering behavior of a dataset. By representing the hierarchy of data modes as a dendrogram of the level sets of a…

Methodology · Statistics 2013-08-01 Brian P. Kent , Alessandro Rinaldo , Timothy Verstynen

We present a simple spectral approach to the well-studied constrained clustering problem. It captures constrained clustering as a generalized eigenvalue problem with graph Laplacians. The algorithm works in nearly-linear time and provides…

Social and Information Networks · Computer Science 2016-01-20 Mihai Cucuringu , Ioannis Koutis , Sanjay Chawla , Gary Miller , Richard Peng

The primary goal in cluster analysis is to discover natural groupings of objects. The field of cluster analysis is crowded with diverse methods that make special assumptions about data and address different scientific aims. Despite its…

Genomics · Quantitative Biology 2018-06-07 Gary K. Chen , Eric Chi , John Ranola , Kenneth Lange

Graph clustering aims to divide the graph into different clusters. The recently emerging deep graph clustering approaches are largely built on graph neural networks (GNN). However, GNN is designed for general graph encoding and there is a…

Machine Learning · Computer Science 2025-04-28 Zhiyuan Ning , Zaitian Wang , Ran Zhang , Ping Xu , Kunpeng Liu , Pengyang Wang , Wei Ju , Pengfei Wang , Yuanchun Zhou , Erik Cambria , Chong Chen

Graph-based clustering has shown promising performance in many tasks. A key step of graph-based approach is the similarity graph construction. In general, learning graph in kernel space can enhance clustering accuracy due to the…

Machine Learning · Computer Science 2019-05-22 Zhao Kang , Honghui Xu , Boyu Wang , Hongyuan Zhu , Zenglin Xu

Spectral clustering is a widely studied problem, yet its complexity is prohibitive for dynamic graphs of even modest size. We claim that it is possible to reuse information of past cluster assignments to expedite computation. Our approach…

Machine Learning · Statistics 2017-06-13 Lionel Martin , Andreas Loukas , Pierre Vandergheynst

We study supervised learning problems using clustering constraints to impose structure on either features or samples, seeking to help both prediction and interpretation. The problem of clustering features arises naturally in text…

Machine Learning · Computer Science 2016-09-20 Vincent Roulet , Fajwel Fogel , Alexandre d'Aspremont , Francis Bach

Cut-based directed graph (digraph) clustering often focuses on finding dense within-cluster or sparse between-cluster connections, similar to cut-based undirected graph clustering methods. In contrast, for flow-based clusterings the edges…

Machine Learning · Computer Science 2022-03-04 Koby Hayashi , Sinan G. Aksoy , Haesun Park

Hierarchical clustering is a class of algorithms that seeks to build a hierarchy of clusters. It has been the dominant approach to constructing embedded classification schemes since it outputs dendrograms, which capture the hierarchical…

Machine Learning · Statistics 2018-08-28 Xiaofei Ma , Satya Dhavala

In many domains, we are interested in analyzing the structure of the underlying distribution, e.g., whether one variable is a direct parent of the other. Bayesian model-selection attempts to find the MAP model and use its structure to…

Machine Learning · Computer Science 2013-01-18 Nir Friedman , Daphne Koller

Biclustering is an unsupervised machine learning technique that simultaneously clusters rows and columns in a data matrix. Biclustering has emerged as an important approach and plays an essential role in various applications such as…

Machine Learning · Computer Science 2022-03-31 Adan Jose-Garcia , Julie Jacques , Vincent Sobanski , Clarisse Dhaenens

Real-world networks often exhibit strong transitivity with nontrivial local clustering spectra and degree correlations. Such features are not easily modeled in tractable network models, creating an obstacle to the theoretical understanding…

Physics and Society · Physics 2026-05-26 Lorenzo Cirigliano , Gareth J. Baxter , Gábor Timár

Clustering is a well-known unsupervised machine learning approach capable of automatically grouping discrete sets of instances with similar characteristics. Constrained clustering is a semi-supervised extension to this process that can be…

Machine Learning · Computer Science 2023-03-02 Germán González-Almagro , Daniel Peralta , Eli De Poorter , José-Ramón Cano , Salvador García

Graph clustering, which aims to divide nodes in the graph into several distinct clusters, is a fundamental yet challenging task. Benefiting from the powerful representation capability of deep learning, deep graph clustering methods have…

Machine Learning · Computer Science 2023-09-13 Yue Liu , Jun Xia , Sihang Zhou , Xihong Yang , Ke Liang , Chenchen Fan , Yan Zhuang , Stan Z. Li , Xinwang Liu , Kunlun He

$n$-gram profiles have been successfully and widely used to analyse long sequences of potentially differing lengths for clustering or classification. Mainly, machine learning algorithms have been used for this purpose but, despite their…

Methodology · Statistics 2024-09-04 José A. Perusquía , Jim E. Griffin , Cristiano Villa

The clustered planarity problem (c-planarity) asks whether a hierarchically clustered graph admits a planar drawing such that the clusters can be nicely represented by regions. We introduce the cd-tree data structure and give a new…

Data Structures and Algorithms · Computer Science 2015-06-19 Thomas Bläsius , Ignaz Rutter

Many Bayesian statistical inference problems come down to computing a maximum a-posteriori (MAP) assignment of latent variables. Yet, standard methods for estimating the MAP assignment do not have a finite time guarantee that the algorithm…

Machine Learning · Statistics 2024-10-31 Harsh Vardhan Dubey , Ji Ah Lee , Patrick Flaherty

This paper investigates graph clustering in the planted cluster model in the presence of {\em small clusters}. Traditional results dictate that for an algorithm to provably correctly recover the clusters, {\em all} clusters must be…

Machine Learning · Computer Science 2013-02-21 Nir Ailon , Yudong Chen , Xu Huan