English
Related papers

Related papers: CHA2: CHemistry Aware Convex Hull Autoencoder Towa…

200 papers

High-throughput approximations of quantum mechanics calculations and combinatorial experiments have been traditionally used to reduce the search space of possible molecules, drugs and materials. However, the interplay of structural and…

Quantum Physics · Physics 2019-10-29 Alain Tchagang , Julio Valdés

Drug discovery using deep learning has attracted a lot of attention of late as it has obvious advantages like higher efficiency, less manual guessing and faster process time. In this paper, we present a novel neural network for generating…

Biomolecules · Quantitative Biology 2021-10-08 Abhinav Sagar

Colloidal self-assembly -- the spontaneous organization of colloids into ordered structures -- has been considered key to produce next-generation materials. However, the present-day staggering variety of colloidal building blocks and the…

Soft Condensed Matter · Physics 2021-06-29 Gabriele Maria Coli , Emanuele Boattini , Laura Filion , Marjolein Dijkstra

We present a novel method for anomaly detection in Solar System object data, in preparation for the Legacy Survey of Space and Time. We train a deep autoencoder for anomaly detection and use the learned latent space to search for other…

Earth and Planetary Astrophysics · Physics 2024-02-22 Brian Rogers , Chris J. Lintott , Steve Croft , Megan E. Schwamb , James R. A. Davenport

Inverse design in science and engineering involves determining optimal design parameters that achieve desired performance outcomes, a process often hindered by the complexity and high dimensionality of design spaces, leading to significant…

Machine Learning · Computer Science 2025-02-24 Luka Grbcic , Juliane Müller , Wibe Albert de Jong

Simultaneously optimizing molecules against multiple therapeutic targets remains a profound challenge in drug discovery, particularly due to sparse rewards and conflicting design constraints. We propose a structured active learning (AL)…

Machine Learning · Computer Science 2025-06-24 Júlia Vilalta-Mor , Alexis Molina , Laura Ortega Varga , Isaac Filella-Merce , Victor Guallar

Molecules have seemed like a natural fit to deep learning's tendency to handle a complex structure through representation learning, given enough data. However, this often continuous representation is not natural for understanding chemical…

Machine Learning · Computer Science 2021-03-12 Austin Clyde , Arvind Ramanathan , Rick Stevens

Optimization in the latent space of variational autoencoders is a promising approach to generate high-dimensional discrete objects that maximize an expensive black-box property (e.g., drug-likeness in molecular generation, function…

Machine Learning · Computer Science 2021-07-02 Pascal Notin , José Miguel Hernández-Lobato , Yarin Gal

Active learning has been increasingly applied to screening functional materials from existing materials databases with desired properties. However, the number of known materials deposited in the popular materials databases such as ICSD and…

Deep neural networks with discrete latent variables offer the promise of better symbolic reasoning, and learning abstractions that are more useful to new tasks. There has been a surge in interest in discrete latent variable models, however,…

Machine Learning · Computer Science 2018-07-23 Aurko Roy , Ashish Vaswani , Arvind Neelakantan , Niki Parmar

Molecular property prediction constitutes a cornerstone of drug discovery and materials science, necessitating models capable of disentangling complex structure-property relationships across diverse molecular modalities. Existing approaches…

Machine Learning · Computer Science 2026-03-24 Long Xu , Junping Guo , Jianbo Zhao , Jianbo Lu , Yuzhong Peng

We introduce Quantum Molecular Autoencoder (MolQAE), the first quantum autoencoder to leverage the complete molecular structures. MolQAE uniquely maps SMILES strings directly to quantum states using parameterized rotation gates, preserving…

Quantum Physics · Physics 2025-06-02 Yi Pan , Hanqi Jiang , Wei Ruan , Dajiang Zhu , Xiang Li , Yohannes Abate , Yingfeng Wang , Tianming Liu

Self-supervised learning methods overcome the key bottleneck for building more capable AI: limited availability of labeled data. However, one of the drawbacks of self-supervised architectures is that the representations that they learn are…

Machine Learning · Computer Science 2022-07-08 Avi Ziskind , Sujeong Kim , Giedrius T. Burachas

Finite element methods typically require a high resolution to satisfactorily approximate micro and even macro patterns of an underlying physical model. This issue can be circumvented by appropriate multiscale strategies that are able to…

Numerical Analysis · Mathematics 2025-12-24 Zhi-Song Liu , Roland Maier , Andreas Rupp

Autoencoders offer a general way of learning low-dimensional, non-linear representations from data without labels. This is achieved without making any particular assumptions about the data type or other domain knowledge. The generality and…

Machine Learning · Computer Science 2025-05-27 Collin Leiber , Lukas Miklautz , Claudia Plant , Christian Böhm

Recently, deep clustering methods have gained momentum because of the high representational power of deep neural networks (DNNs) such as autoencoder. The key idea is that representation learning and clustering can reinforce each other: Good…

Machine Learning · Computer Science 2021-10-01 Wengang Guo , Kaiyan Lin , Wei Ye

Current object detection approaches predict bounding boxes, but these provide little instance-specific information beyond location, scale and aspect ratio. In this work, we propose to directly regress to objects' shapes in addition to their…

Computer Vision and Pattern Recognition · Computer Science 2017-07-06 Saumya Jetley , Michael Sapienza , Stuart Golodetz , Philip H. S. Torr

Anomaly detection in medical images is an important yet challenging task due to the diversity of possible anomalies and the practical impossibility of collecting comprehensively annotated data sets. In this work, we tackle unsupervised…

Computer Vision and Pattern Recognition · Computer Science 2025-07-25 Francesco Dalmonte , Emirhan Bayar , Emre Akbas , Mariana-Iuliana Georgescu

An anomaly detection method based on deep autoencoders is proposed to address anomalies that often occur in enterprise-level ETL data streams. The study first analyzes multiple types of anomalies in ETL processes, including delays, missing…

Machine Learning · Computer Science 2025-11-04 Xin Chen , Saili Uday Gadgil , Kangning Gao , Yi Hu , Cong Nie

Accurate fault detection in high-dimensional industrial environments remains a major challenge due to the inherent complexity, noise, and redundancy in sensor data. This paper introduces CLAIRE, i.e., a hybrid end-to-end learning framework…

Machine Learning · Computer Science 2026-03-09 Mohammadhossein Ghahramani , Mengchu Zhou