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Routinely navigating through an ever-changing and unsteady environment, and utilizing chemical energy, molecular motors transport the cell's crucial components, such as neurotransmitters and organelles. They generate force and pull cargo,…

Biological Physics · Physics 2012-09-28 Bartosz Lisowski , Michał Żabicki

Associative learning is one of the key mechanisms displayed by living organisms in order to adapt to their changing environments. It was early recognized to be a general trait of complex multicellular organisms but also found in "simpler"…

Cell Behavior · Quantitative Biology 2017-01-24 Javier Macia , Blai Vidiella , Ricard Sole

Reasoning about hypotheses and updating knowledge through empirical observations are central to scientific discovery. In this work, we applied logic-based machine learning methods to drive biological discovery by guiding experimentation.…

Molecular Networks · Quantitative Biology 2025-06-09 Lun Ai , Stephen H. Muggleton , Shi-Shun Liang , Geoff S. Baldwin

Local interactions among biomolecules, and the role played by their environment, have gained increasing attention in modelling biochemical reactions. By defining the automaton of molecular perceptions, we explore an agent-based…

Computational Engineering, Finance, and Science · Computer Science 2021-11-24 Stefano Maestri , Emanuela Merelli

We experimentally investigate the structural behavior of an interacting colloidal monolayer being driven across a decagonal quasiperiodic potential landscape created by an optical interference pattern. When the direction of the driving…

Soft Condensed Matter · Physics 2015-06-05 Thomas Bohlein , Clemens Bechinger

We report the first systematic study of designed two-input biochemical systems as information processing gates with favorable noise-transmission properties accomplished by modifying the gate's response from convex shape to sigmoid in both…

Biological Physics · Physics 2013-11-05 Saira Bakshi , Oleksandr Zavalov , Jan Halamek , Vladimir Privman , Evgeny Katz

Recent advances in metamaterials and fabrication techniques have revived interest in mechanical computing. Contrary to techniques relying on static deformations of buckling beams or origami-based lattices, the integration of wave scattering…

Applied Physics · Physics 2025-11-04 Ethan Fort , Mohamed Mousa , Mostafa Nouh

Cognitive studies and artificial intelligence have developed distinct models for various inferential mechanisms (categorization, induction, abduction, causal inference, contrast, merge, ...). Yet, both natural and artificial views on…

Artificial Intelligence · Computer Science 2025-10-28 Giovanni Sileno , Jean-Louis Dessalles

We propose hardware-efficient schemes for implementing logical H and S gates transversally on rotated surface codes with reconfigurable neutral atom arrays. For logical H gates, we develop a simple strategy to rotate code patches…

Quantum Physics · Physics 2024-12-03 Zi-Han Chen , Ming-Cheng Chen , Chao-Yang Lu , Jian-Wei Pan

Modern computational chemistry has reached a stage at which massive exploration into chemical reaction space with unprecedented resolution with respect to the number of potentially relevant molecular structures has become possible. Various…

Chemical Physics · Physics 2020-04-27 Jan P. Unsleber , Markus Reiher

As a fundamental phenomenon in quantum systems, spontaneous emission constitutes an inevitable source of error, which ultimately degrades the fidelity of quantum logic gates. A successful quantum logic gate needs to operate on the condition…

Quantum Physics · Physics 2025-09-25 Yuan Sun

Many systems occurring in real-world applications, such as controlling the motions of robots or modeling the spread of diseases, are switched impulsive systems. To ensure that the system state stays in a safe region (e.g., to avoid…

Optimization and Control · Mathematics 2024-09-10 Katharina Bieker , Hugo Tadashi Kussaba , Philipp Scholl , Jaesug Jung , Abdalla Swikir , Sami Haddadin , Gitta Kutyniok

The anyonic excitations of topological two-body color code model are used to implement a set of gates. Because of two-body interactions, the model can be simulated in optical lattices. The excitations have nontrivial mutual statistics, and…

Quantum Physics · Physics 2015-05-20 Mehdi Kargarian

Molecular dynamics simulations have been performed on pure liquid water, aqueous solutions of sodium chloride, and polymer solutions exposed to a strong external electric field with the goal to gain molecular insight into the structural…

Soft Condensed Matter · Physics 2016-08-08 I. Nezbeda , J. Jirsák , F. Moučka , W. R. Smith

Adiabatic quantum transistors allow quantum logic gates to be performed by applying a large field to a quantum many-body system prepared in its ground state, without the need for local control. The basic operation of such a device can be…

Quantum Physics · Physics 2015-05-18 Dominic J. Williamson , Stephen D. Bartlett

Conspectus: The ability to navigate in chemical gradients, called chemotaxis, is crucial for the survival of microorganisms. It allows them to find food and to escape from toxins. Many microorganisms can produce the chemicals to which they…

Soft Condensed Matter · Physics 2018-10-03 Benno Liebchen , Hartmut Löwen

The development of quantum codes with good error correction parameters and useful sets of transversal gates is a problem of major interest in quantum error-correction. Abundant prior works have studied transversal gates which are restricted…

Quantum Physics · Physics 2025-07-10 Zhiyang He , Vinod Vaikuntanathan , Adam Wills , Rachel Yun Zhang

While automated chemical tools excel at specific tasks, they have struggled to capture the strategic thinking that characterizes expert chemical reasoning. Here we demonstrate that large language models (LLMs) can serve as powerful tools…

Artificial Intelligence · Computer Science 2025-07-25 Andres M Bran , Theo A Neukomm , Daniel P Armstrong , Zlatko Jončev , Philippe Schwaller

We study quantum information processing using superpositions of Fock states in superconducting resonators, as quantum $d$-level systems (qudits). A universal set of single and coupled logic gates is theoretically proposed for resonators…

Quantum Physics · Physics 2015-05-30 Frederick W. Strauch

We theoretically study mixtures of chemically-interacting particles, which produce or consume a chemical to which they are attracted or repelled, in the most general case of many coexisting species. We find a new class of active phase…

Soft Condensed Matter · Physics 2019-07-15 Jaime Agudo-Canalejo , Ramin Golestanian