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Related papers: Chemical logic gates on active colloids

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We systematically construct and classify fault-tolerant logical gates implemented by constant-depth circuits for quantum codes using cohomology operations and symmetry. These logical gates are obtained from unitary operators given by…

Quantum Physics · Physics 2025-06-30 Po-Shen Hsin , Ryohei Kobayashi , Guanyu Zhu

We apply logic-based machine learning techniques to facilitate cellular engineering and drive biological discovery, based on comprehensive databases of metabolic processes called genome-scale metabolic network models (GEMs). Predicted host…

Artificial Intelligence · Computer Science 2024-11-14 Lun Ai , Stephen H. Muggleton , Shi-shun Liang , Geoff S. Baldwin

We introduce a novel scheme that combines phonon-mediated quantum logic gates in trapped ions with the benefits of continuous dynamical decoupling. We demonstrate theoretically that a strong driving of the qubit decouples it from external…

Quantum Physics · Physics 2012-04-11 A. Bermudez , P. O. Schmidt , M. B. Plenio , A. Retzker

These lecture notes are designed to provide a brief introduction into the phenomenology of active matter and to present some of the analytical tools used to rationalize the emergent behavior of active systems. Such systems are made of…

Soft Condensed Matter · Physics 2018-07-02 Étienne Fodor , M. Cristina Marchetti

An implementation is proposed of single qubit gates, e.g., phase, NOT, \sqrt{NOT} and Hadamard, operating on polarized photons and based on light storage. Instead of processing photons themselves, qubit transformations are performed on…

Quantum Physics · Physics 2011-02-17 K. Slowik , A. Raczynski , J. Zaremba , S. Zielinska-Kaniasty

The recently introduced tile codes are a promising alternative to surface codes, combining two-dimensional locality with higher encoding efficiency. While surface codes are well understood in terms of their logical operators and boundary…

Fluidic iontronics offer a unique capability for emulating the chemical processes found in neurons. We extract multiple distinct chemically regulated synaptic features from an experimentally accessible conical microfluidic channel carrying…

Soft Condensed Matter · Physics 2026-02-13 T. M. Kamsma , M. S. Klop , W. Q. Boon , C. Spitoni , B. Rueckauer , R. van Roij

We propose a simple theoretical model for a molecular chemical engine that catalyzes a chemical reaction and converts the free energy released by the reaction into mechanical work. Binding and unbinding processes of reactant and product…

Statistical Mechanics · Physics 2018-05-22 Kazuo Sasaki

The discovery and design of functional molecules remain central challenges across chemistry,biology, and materials science. While recent advances in machine learning have accelerated molecular property prediction and candidate generation,…

Artificial Intelligence · Computer Science 2026-03-11 Haibin Wen , Zhe Zhao , Fanfu Wang , Tianyi Xu , Hao Zhang , Chao Yang , Ye Wei

We study photon-mediated interactions between molecular spin qudits in the dispersive regime of operation. We derive from a microscopic model the effective interaction between molecular spins, including their crystal field anisotropy (i.e.,…

Quantum Physics · Physics 2022-08-17 Álvaro Gómez-León

Understanding the operation of biological molecular motors, nanoscale machines that transduce electrochemical energy into mechanical work, is enhanced by bottom-up strategies to synthesize novel motors.

Biological Physics · Physics 2017-05-15 Chapin Korosec , Nancy R. Forde

Since the first demonstration of coherent control of a quantum state of a superconducting charge qubit a variety of Josephson-junction-based qubits have been implemented with remarkable progress in coherence time and read-out schemes.…

Mesoscale and Nanoscale Physics · Physics 2009-11-10 T. Yamamoto , Yu. A. Pashkin , O. Astafiev , Y. Nakamura , J. S. Tsai

Logic gates can be written in terms of complex differential operators, where the inputs and outputs are holomorphic functions with several variables. Using the polar representation of complex numbers, we arrive at an immediate connection…

Quantum Physics · Physics 2024-12-05 M. W. AlMasri

Like ordinary molecules are composed of atoms, colloidal molecules consist of several species of colloidal particles tightly bound together. If one of these components is self-propelled or swimming, novel "active colloidal molecules"…

Soft Condensed Matter · Physics 2018-05-23 Hartmut Löwen

Quantum error correcting codes protect quantum computation from errors caused by decoherence and other noise. Here we study the problem of designing logical operations for quantum error correcting codes. We present an automated procedure…

Quantum Physics · Physics 2022-10-25 Hongxiang Chen , Michael Vasmer , Nikolas P. Breuckmann , Edward Grant

DNA-mediated multivalent interactions between colloidal particles have been extensively applied for their ability to program bulk phase behaviour and dynamic processes. Exploiting the competition between different types of DNA-DNA bonds,…

The cold atom qubit platform emerges as an attractive choice for the next stage of quantum computation research, where a special family of synthetic analytical pulses has considerably improved the experimental performance of…

Quantum Physics · Physics 2024-11-18 Xin Wang , Tianze Sheng , Yuan Sun

We realize autonomous Boolean networks by using logic gates in their autonomous mode-of-operation on a field-programmable gate array. This allows us to implement time-continuous systems with complex dynamical behaviors that can be…

Adaptation and Self-Organizing Systems · Physics 2013-12-16 David P. Rosin , Damien Rontani , Daniel J. Gauthier , Eckehard Schöll

The cell cycle is a tightly controlled process, yet its underlying genetic network shows marked differences across species. Which of the associated structural features follow solely from the ability to impose the appropriate gene expression…

Molecular Networks · Quantitative Biology 2015-06-12 M. Zagorski , A. Krzywicki , O. C. Martin

Chemically powered self-propelled colloids generate a motor force by converting locally a source of energy into directed motion, a process that has been explored both in experiments and in computational models. The use of active colloids as…

Soft Condensed Matter · Physics 2019-08-22 Pierre de Buyl