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Genetic sequencing has become an increasingly affordable and accessible source of genomic data in computational biology. This data is often represented as $k$-mers, i.e., strings of some fixed length $k$ with symbols chosen from a reference…

Combinatorics · Mathematics 2020-07-06 Lucas Laird

The metric dimension of a graph measures how uniquely vertices may be identified using a set of landmark vertices. This concept is frequently used in the study of network architecture, location-based problems and communication. Given a…

Combinatorics · Mathematics 2024-10-14 S. Prabhu , D. Sagaya Rani Jeba , Paul Manuel , Akbar Davoodi

For an undirected graph G=(V,E), a vertex x \in V separates vertices u and v (where u,v \in V, u \neq v) if their distances to x are not equal. Given an integer parameter k \geq 1, a set of vertices L \subseteq V is a feasible solution if…

Data Structures and Algorithms · Computer Science 2014-10-17 Ron Adar , Leah Epstein

We study the Steiner Tree problem on unit disk graphs. Given a $n$ vertex unit disk graph $G$, a subset $R\subseteq V(G)$ of $t$ vertices and a positive integer $k$, the objective is to decide if there exists a tree $T$ in $G$ that spans…

Computational Geometry · Computer Science 2020-04-21 Sujoy Bhore , Paz Carmi , Sudeshna Kolay , Meirav Zehavi

Let $G = (V,w)$ be a weighted undirected graph with $m$ edges. The cut dimension of $G$ is the dimension of the span of the characteristic vectors of the minimum cuts of $G$, viewed as vectors in $\{0,1\}^m$. For every $n \ge 2$ we show…

Computational Complexity · Computer Science 2020-11-30 Troy Lee , Tongyang Li , Miklos Santha , Shengyu Zhang

The product dimension of a graph G is defined as the minimum natural number l such that G is an induced subgraph of a direct product of l complete graphs. In this paper we study the product dimension of forests, bounded treewidth graphs and…

Combinatorics · Mathematics 2012-09-12 L. Sunil Chandran , Rogers Mathew , Deepak Rajendraprasad , Roohani Sharma

Given a connected graph $G$, a vertex $w\in V(G)$ distinguishes two different vertices $u,v$ of $G$ if the distances between $w$ and $u$ and between $w$ and $v$ are different. Moreover, $w$ strongly resolves the pair $u,v$ if there exists…

Combinatorics · Mathematics 2015-08-17 Dorota Kuziak , Iztok Peterin , Ismael G. Yero

A vertex $w$ in a graph $G$ is said to resolve two vertices $u$ and $v$ if $d(w,u)\neq d(w, v)$. A set $W$ of vertices is a resolving set for $G$ if every pair of distinct vertices is resolved by some vertex in $W$. The metric dimension of…

Combinatorics · Mathematics 2025-10-15 Nadia Benakli , Nicole Froitzheim , David Martinez

Some graphs admit drawings in the Euclidean k-space in such a (natu- ral) way, that edges are represented as line segments of unit length. Such drawings will be called k dimensional unit distance representations. When two non-adjacent…

Combinatorics · Mathematics 2010-01-07 Jan Kratochvil , Boris Horvat , Tomaz Pisanski

In this paper we present a new width measure for a tree decomposition, minor-matching hypertree width, $\mu\text{-}tw$, for graphs and hypergraphs, such that bounding the width guarantees that set of maximal independent sets has a…

Data Structures and Algorithms · Computer Science 2017-07-05 Nikola Yolov

Let $G$ be a connected graph and $W=\{ w_1, w_2, \ldots, w_k \} \subseteq V(G)$ be an ordered set. For every vertex $v$, the metric representation of $v$ with respect to $W$ is an ordered $k$-vector defined as $r(v|W):=(d(v,w_1), d(v,w_2),…

Combinatorics · Mathematics 2015-05-22 H. Amraei , H. R. Maimani , A. Seify , A. Zaeembashi

In Two-Sets Cut-Uncut, we are given an undirected graph $G=(V,E)$ and two terminal sets $S$ and $T$. The task is to find a minimum cut $C$ in $G$ (if there is any) separating $S$ from $T$ under the following ``uncut'' condition. In the…

Data Structures and Algorithms · Computer Science 2024-08-27 Matthias Bentert , Fedor V. Fomin , Fanny Hauser , Saket Saurabh

We define the (random) $k$-cut number of a rooted graph to model the difficulty of the destruction of a resilient network. The process is as the cut model of Meir and Moon except now a node must be cut $k$ times before it is destroyed. The…

Probability · Mathematics 2020-04-21 Xing Shi Cai , Luc Devroye , Cecilia Holmgren , Fiona Skerman

The component size of a graph is the maximum number of edges in any connected component of the graph. Given a graph $G$ and two integers $k$ and $c$, $(k,c)$-Decomposition is the problem of deciding whether $G$ admits an edge partition into…

Computational Complexity · Computer Science 2021-10-05 Rain Jiang , Kai Jiang , Minghui Jiang

We study the problem of distance-preserving graph compression for weighted paths and trees. The problem entails a weighted graph $G = (V, E)$ with non-negative weights, and a subset of edges $E^{\prime} \subset E$ which needs to be removed…

Data Structures and Algorithms · Computer Science 2024-09-19 Amirali Madani , Anil Maheshwari

For a graph $G$, and two distinct vertices $u$ and $v$ of $G$, let $n_G(u,v)$ be the number of vertices of $G$ that are closer in $G$ to $u$ than to $v$. Miklavi\v{c} and \v{S}parl (arXiv:2011.01635v1) define the distance-unbalancedness of…

Combinatorics · Mathematics 2020-12-24 Marie Kramer , Dieter Rautenbach

A resolving set for a graph $\Gamma$ is a collection of vertices $S$, chosen so that for each vertex $v$, the list of distances from $v$ to the members of $S$ uniquely specifies $v$. The metric dimension $\mu(\Gamma)$ is the smallest size…

Combinatorics · Mathematics 2018-03-02 Robert F. Bailey

Geometric graphs appear in many real-world data sets, such as road networks, sensor networks, and molecules. We investigate the notion of distance between embedded graphs and present a metric to measure the distance between two geometric…

Data Structures and Algorithms · Computer Science 2024-07-15 Erin Wolf Chambers , Elizabeth Munch , Sarah Percival , Xinyi Wang

Given a simple and connected graph $G=(V,E)$, and a positive integer $k$, a set $S\subseteq V$ is said to be a $k$-metric generator for $G$, if for any pair of different vertices $u,v\in V$, there exist at least $k$ vertices…

Combinatorics · Mathematics 2015-10-27 A. Estrada-Moreno , I. G. Yero , J. A. Rodríguez-Velázquez

For a vertex $v$ of a connected graph $G(V,E)$ and a subset $S$ of $V$, the distance between $v$ and $S$ is defined by $d(v,S)=min\{d(v,x):x \in S \}.$ For an ordered \emph{k}-partition $\Pi=\{S_1,S_2\ldots S_k\}$ of $V$, the representation…

Combinatorics · Mathematics 2016-10-31 Cyriac Grigorious , Sudeep Stephen , Bharati Rajan , Mirka Miller , Paul Manuel
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