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Related papers: When does humoral memory enhance infection?

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In this paper we extend the Celada-Seiden (CS) model of the humoral immune response to include infectious virus and cytotoxic T lymphocytes (cellular response). The response of the system to virus involves a competition between the ability…

chao-dyn · Physics 2015-06-24 Michele Bezzi , Franco Celada , Stefano Ruffo , Philip E. Seiden

Here we study ODE epidemic models with spread of awareness, assuming that a certain proportion of the hosts will become aware of the ongoing outbreak upon recovery. This study builds on W. Just and J. Saldana's work in [1], and is conducted…

Dynamical Systems · Mathematics 2017-03-01 Ying Xin

Infectious disease transmission in human populations has a complex two-way interaction with changes in host behaviour. It is increasingly recognised that incorporating adaptive behavioural change into epidemic models is important for…

Populations and Evolution · Quantitative Biology 2026-04-14 Michael J. Plank , Matt Ryan , Lloyd Chapman , Roslyn I. Hickson , Thomas House , Emma McBryde , James M. McCaw

The phenomenon of immunological memory has been known for a long time. But, the underlying mechanism is poorly understood. According to the theory of clonal selection the response to a specific invading antigen (e.g., bacteria) is offered…

Statistical Mechanics · Physics 2007-05-23 Debashish Chowdhury

We study a dynamical system model of an idiotypic immune network with a small number of degrees of freedom, mainly focusing on the effect of a threshold above which antibodies can recognise antibodies. The response of the system to…

Condensed Matter · Physics 2009-11-07 Satoko Itaya , Tatsuya Uezu

When highly active antiretroviral therapy is administered for long periods of time to HIV-1 infected patients, most patients achieve viral loads that are ``undetectable'' by standard assay (i.e., HIV-1 RNA $ < 50$ copies/ml). Yet despite…

Populations and Evolution · Quantitative Biology 2012-11-20 Laura E. Jones , Alan S. Perelson

A dynamic model of non-lineal time-dependent ordinary differential equations (ODE) has been applied to the interactions of a HIV infection with the immune system cells. This model has been simplified into two compartments: lymph node and…

Cell Behavior · Quantitative Biology 2020-08-07 Miguel Ramos Pascual

Incorporating dynamic contact networks and delayed awareness into a contagion model with memory, we study the spreading patterns of infectious diseases in connected populations. It is found that the spread of an infectious disease is not…

Physics and Society · Physics 2015-05-20 Li-Xin Zhong , Tian Qiu , Fei Ren , Ping-Ping Li , Bi-Hui Chen

Human immunodeficiency virus (HIV-1 or simply HIV) induces a persistent infection, which in the absence of treatment leads to AIDS and death in almost all infected individuals. HIV infection elicits a vigorous immune response starting about…

Populations and Evolution · Quantitative Biology 2015-06-05 Vitaly V. Ganusov , Richard A. Neher , Alan S. Perelson

In the last decades, the interest to understand the connection between brain and body has grown notably. For example, in psychoneuroimmunology many studies associate stress, arising from many different sources and situations, to changes in…

Quantitative Methods · Quantitative Biology 2022-07-27 Maria Elena Gonzalez Herrero , Christian Kuehn

A hallmark of the adaptive immune response is the proliferation of pathogen-specific lymphocytes that leave in their wake a long lived population of cells that provide lasting immunity. A subject of ongoing investigation is when during an…

Cell Behavior · Quantitative Biology 2020-06-04 Alexander S. Miles , Philip D. Hodgkin , Ken R. Duffy

We study the influence of the rate of the attainment of herd immunity (HI), in the absence of an approved vaccine, on the vulnerable population. We essentially ask the question: how hard the evolution towards the desired herd immunity could…

Populations and Evolution · Quantitative Biology 2020-06-01 Sayantan Mondal , Saumyak Mukherjee , Biman Bagchi

Stochastic infectious disease models capture uncertainty in public health outcomes and have become increasingly popular in epidemiological practice. However, calibrating these models to observed data is challenging with existing methods for…

Methodology · Statistics 2024-12-18 Prayag Chatha , Fan Bu , Jeffrey Regier , Evan Snitkin , Jon Zelner

Evidence accumulation models (EAMs) provide a powerful framework for inferring latent cognitive processes from choice and reaction time data. While EAMs are traditionally limited to binary choices, recent developments have extended them to…

Methodology · Statistics 2026-05-12 Yufei Wu , Tamás Szűcs , Agnes Moors , Francis Tuerlinckx

In this paper we study intra-host viral adaptation by antigenic cooperation - a mechanism of immune escape that serves as an alternative to the standard mechanism of escape by continuous genomic diversification and allows to explain a…

Populations and Evolution · Quantitative Biology 2023-04-07 Leonid Bunimovich , Athulya Ram , Pavel Skums

The computational complexity of the self-attention mechanism in Transformer models significantly limits their ability to generalize over long temporal durations. Memory-augmentation, or the explicit storing of past information in external…

Computation and Language · Computer Science 2022-11-29 Omri Raccah , Phoebe Chen , Ted L. Willke , David Poeppel , Vy A. Vo

In this work, we introduce a quantum-inspired epidemic model to study the dynamics of an infectious disease in a population divided into compartments. By treating the healthy population as a large reservoir, we construct a framework based…

Populations and Evolution · Quantitative Biology 2025-03-19 Fabio Bagarello , Francesco Gargano , Polina Khrennikova

The mechanisms underlying the formation of post-infection sequelae are complex and remain controversial. This hypothesis integrates Bystryn's antibody feedback phenomenon and Imbiakha's immune cost theory, proposing for the first time a…

Quantitative Methods · Quantitative Biology 2025-06-10 Shi Qiru

An interesting inference drawn by some Covid-19 epidemiological models is that there exists a proportion of the population who are not susceptible to infection -- even at the start of the current pandemic. This paper introduces a model of…

Quantitative Methods · Quantitative Biology 2020-09-18 Thomas Parr , Anjali Bhat , Peter Zeidman , Aimee Goel , Alexander J. Billig , Rosalyn Moran , Karl J. Friston

We adapt the article of Forien, Pang, Pardoux and Zotsa: Arxiv preprint Arxiv2210.04667(2022), on epidemic models with varying infectivity and waning immunity, to incorporate the memory of the last infection. To this end, we introduce a…

Probability · Mathematics 2025-05-02 Hélène Guérin , Arsene Brice Zotsa-Ngoufack