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A large class of phylogenetic networks can be obtained from trees by the addition of horizontal edges between the tree edges. These networks are called tree based networks. Reticulation-visible networks and child-sibling networks are all…

Populations and Evolution · Quantitative Biology 2015-09-09 Louxin Zhang

Phylogenetic networks are a type of directed acyclic graph that represent how a set $X$ of present-day species are descended from a common ancestor by processes of speciation and reticulate evolution. In the absence of reticulate evolution,…

Combinatorics · Mathematics 2017-08-11 Andrew Francis , Charles Semple , Mike Steel

Building on prior work that established Matrix Quasi-tree Theorems for special embedded graphs, in this paper, we develop a comprehensive theory applicable to all embedded graphs. We introduce symbolic skew-adjacency matrices and reduction…

Combinatorics · Mathematics 2025-12-02 Qingying Deng , Xian'an Jin , Qi Yan , Yexiang Yan

Carmesin has extended Robertson and Seymour's tree-of-tangles theorem to the infinite tangles of locally finite infinite graphs. We extend it further to the infinite tangles of all infinite graphs. Our result has a number of applications…

Combinatorics · Mathematics 2021-01-20 Ann-Kathrin Elm , Jan Kurkofka

A graph is chordal if it contains no induced cycle of length four or more. While finite chordal graphs are precisely those admitting tree-decompositions into cliques, this fails for infinite graphs. We establish two results extending the…

Combinatorics · Mathematics 2026-03-26 Max Pitz , Lucas Real , Roman Schaut

Phylogenetic networks are used to study evolutionary relationships between species in biology. Such networks are often categorized into classes by their topological features, which stem from both biological and computational motivations. We…

Combinatorics · Mathematics 2020-04-17 Leo van Iersel , Remie Janssen , Mark Jones , Yukihiro Murakami , Norbert Zeh

Every end of an infinite graph $ G $ defines a tangle of infinite order in $ G $. These tangles indicate a highly cohesive substructure in the graph if and only if they are closed in some natural topology. We characterize, for every finite…

Combinatorics · Mathematics 2025-05-16 Jay Lilian Kneip

The ability to generate entangled photon-pairs over a broad wavelength range opens the door to the simultaneous distribution of entanglement to multiple users in a network by using centralized sources and flexible wavelength-division…

We introduce two new types of graph configurations, the Jflower and the Jposy, which generalize the classical flower and posy configurations of Edmonds, Sterboul, and Deming in the context of maximum matchings. These generalized…

Combinatorics · Mathematics 2026-03-11 Daniel A. Jaume , Cristian Panelo , Kevin Pereyra

It has recently been shown that infinite matroids can be axiomatized in a way that is very similar to finite matroids and permits duality. This was previously thought impossible, since finitary infinite matroids must have non-finitary…

Combinatorics · Mathematics 2012-07-12 Henning Bruhn , Reinhard Diestel

In finite graphs, finite-order tangles offer an abstract description of highly connected substructures. In infinite graphs, infinite-order tangles compactify the graphs in the same way the ends compactify connected locally finite graphs.…

Combinatorics · Mathematics 2019-08-28 Jan Kurkofka

Mixed connectivity is a generalization of vertex and edge connectivity. A graph is $(p,0)$-connected, $p>0$, if the graph remains connected after removal of any $p-1$ vertices. A graph is $(p,q)$-connected, $p\geq 0$, $q>0$, if it remains…

Combinatorics · Mathematics 2010-02-15 Rija Erves , Janez Zerovnik

This is a new and short proof of the main theorem of classical structure tree theory. Namely, we show the existence of certain automorphism-invariant tree-decompositions of graphs based on the principle of removing finitely many edges. This…

Group Theory · Mathematics 2010-03-05 Bernhard Krön

In this paper, we revisit the split decomposition of graphs and give new combinatorial and algorithmic results for the class of totally decomposable graphs, also known as the distance hereditary graphs, and for two non-trivial subclasses,…

Discrete Mathematics · Computer Science 2011-04-19 Emeric Gioan , Christophe Paul

Every finite graph $G$ can be decomposed in a canonical way that displays its local connectivity-structure [DJKK26]. These decompositions are defined via a suitable more tree-like covering of $G$, whose tangle-tree structure is projected…

Combinatorics · Mathematics 2026-03-20 Raphael W. Jacobs , Paul Knappe , Jan Kurkofka

Graphs and hypergraphs combine expressive modeling power with algorithmic efficiency for a wide range of applications. Hedgegraphs generalize hypergraphs further by grouping hyperedges under a color/hedge. This allows hedgegraphs to model…

Data Structures and Algorithms · Computer Science 2025-10-30 Karthekeyan Chandrasekaran , Chandra Chekuri , Weihang Wang , Weihao Zhu

This work addresses the intrinsic relationship between trees and networks (i.e. graphs). A complete (invertible) mapping is presented which allows trees to be mapped into weighted graphs and then backmapped into the original tree without…

Physics and Society · Physics 2008-08-07 Luciano da Fontoura Costa , Francisco Aparecido Rodrigues

Reticulate evolution can be modelled using phylogenetic networks. Tree-based networks, which are one of the more general classes of phylogenetic networks, have recently gained eminence for its ability to represent evolutionary histories…

Populations and Evolution · Quantitative Biology 2024-07-15 Joan Carles Pons , Pau Vives López , Yukihiro Murakami , Leo Van Iersel

We prove a nonuniqueness theorem for Bernoulli site percolation on properly embedded planar graphs, and we obtain a general connectivity principle beyond planarity. Let $G$ be an infinite connected graph properly embedded in $\RR^2$ with…

Probability · Mathematics 2026-03-23 Zhongyang Li

We prove a tangle-tree theorem and a tangle duality theorem for abstract separation systems $\vec S$ that are submodular in the structural sense that, for every pair of oriented separations, $\vec S$ contains either their meet or their join…

Combinatorics · Mathematics 2019-04-25 Reinhard Diestel , Joshua Erde , Daniel Weißauer
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