Related papers: Chaining of Maximal Exact Matches in Graphs
In the k-Disjoint Shortest Paths problem, a set of terminal pairs of vertices $\{(s_i,t_i)\mid 1\le i\le k\}$ is given and we are asked to find paths $P_1,\ldots,P_k$ such that each path $P_i$ is a shortest path from $s_i$ to $t_i$ and…
Detecting the Maximum Common Subgraph (MCS) between two input graphs is fundamental for applications in drug synthesis, malware detection, cloud computing, etc. However, MCS computation is NP-hard, and state-of-the-art MCS solvers rely on…
A heapable sequence is a sequence of numbers that can be arranged in a "min-heap data structure". Finding a longest heapable subsequence of a given sequence was proposed by Byers, Heeringa, Mitzenmacher, and Zervas (ANALCO 2011) as a…
We define and study analogs of probabilistic tree embedding and tree cover for directed graphs. We define the notion of a DAG cover of a general directed graph $G$: a small collection $D_1,\dots D_g$ of DAGs so that for all pairs of…
We study the fully dynamic maximum matching problem. In this problem, the goal is to efficiently maintain an approximate maximum matching of a graph that is subject to edge insertions and deletions. Our focus is on algorithms that maintain…
Aligning a sequence to a walk in a labeled graph is a problem of fundamental importance to Computational Biology. For finding a walk in an arbitrary graph with $|E|$ edges that exactly matches a pattern of length $m$, a lower bound based on…
Counting maximum matchings in a graph is of great interest in statistical mechanics, solid-state chemistry, theoretical computer science, mathematics, among other disciplines. However, it is a challengeable problem to explicitly determine…
A matching cut in a graph G is an edge cut of G that is also a matching. This short survey gives an overview of old and new results and open problems for Maximum Matching Cut, which is to determine the size of a largest matching cut in a…
In a graph, a (perfect) matching cut is an edge cut that is a (perfect) matching. Matching Cut (MC), respectively, Perfect Matching Cut (PMC), is the problem of deciding whether a given graph has a matching cut, respectively, a perfect…
In this paper, we study the maximum matching problem in RDV graphs, i.e., graphs that are vertex-intersection graphs of downward paths in a rooted tree. We show that this problem can be reduced to a problem of testing (repeatedly) whether a…
We study the problem of connecting the parts of a multipartite graph using a minimum number of edges under a matching constraint. We introduce interconnection trees, defined as matchings whose projections onto the quotient graph form a…
Given a weighted bipartite graph $G = (L, R, E, w)$, the maximum weight matching (MWM) problem seeks to find a matching $M \subseteq E$ that maximizes the total weight $\sum_{e \in M} w(e)$. This paper presents a novel algorithm with a time…
In this paper, we provide a novel enumeration algorithm for the set of all walks of a given length within a directed graph. Our algorithm has worst-case constant delay between outputting succinct representations of such walks, after a…
We show that the number of perfect matching in a simple graph $G$ with an even number of vertices and degree sequence $d_1,d_2, ..., d_n$ is at most $\prod_{i=1}^n (d_i !)^{\frac{1}{2d_i}}$. This bound is sharp if and only if $G$ is a union…
The problem of finding the longest simple cycle in a directed graph is NP-hard, with critical applications in computational biology, scheduling, and network analysis. Existing approaches include exact algorithms with exponential runtimes,…
String matching is the problem of finding all the occurrences of a pattern in a text. We propose improved versions of the fast family of string matching algorithms based on hashing $q$-grams. The improvement consists of considering minimal…
In this paper, we present a quantum algorithm for dynamic programming approach for problems on directed acyclic graphs (DAGs). The running time of the algorithm is $O(\sqrt{\hat{n}m}\log \hat{n})$, and the running time of the best known…
Different directed acyclic graphs (DAGs) may be Markov equivalent in the sense that they entail the same conditional independence relations among the observed variables. Chickering (1995) provided a transformational characterization of…
Crossing minimization is one of the central problems in graph drawing. Recently, there has been an increased interest in the problem of minimizing crossings between paths in drawings of graphs. This is the metro-line crossing minimization…
We propose an exact algorithm for solving the longest simple path problem between two given vertices in undirected weighted graphs. By using graph partitioning and dynamic programming, we obtain an algorithm that is significantly faster…