Related papers: Chaining of Maximal Exact Matches in Graphs
For a $k$-graph $\mathcal{F}\subset \binom{[n]}{k}$, the clique number of $\mathcal{F}$ is defined to be the maximum size of a subset $Q$ of $[n]$ with $\binom{Q}{k}\subset \mathcal{F}$. In the present paper, we determine the maximum number…
In this paper we study the classic problem of computing a maximum cardinality matching in general graphs $G = (V, E)$. The best known algorithm for this problem till date runs in $O(m \sqrt{n})$ time due to Micali and Vazirani \cite{MV80}.…
In observational studies, the true causal model is typically unknown and needs to be estimated from available observational and limited experimental data. In such cases, the learned causal model is commonly represented as a partially…
In a graph, a perfect matching cut is an edge cut that is a perfect matching. Perfect Matching Cut (PMC) is the problem of deciding whether a given graph has a perfect matching cut, and is known to be NP-complete. We revisit the problem and…
We study the maximum matching problem in fully dynamic graphs: a graph is undergoing both edge insertions and deletions, and the goal is to efficiently maintain a large matching after each edge update. This problem has received considerable…
Maximal Clique Enumeration (MCE) is a fundamental graph mining problem, and is useful as a primitive in identifying dense structures in a graph. Due to the high computational cost of MCE, parallel methods are imperative for dealing with…
Answering exact shortest path distance queries is a fundamental task in graph theory. Despite a tremendous amount of research on the subject, there is still no satisfactory solution that can scale to billion-scale complex networks.…
This paper considers fully dynamic graph algorithms with both faster worst case update time and sublinear space. The fully dynamic graph connectivity problem is the following: given a graph on a fixed set of n nodes, process an online…
Sequence Alignment is the process of aligning biological sequences in order to identify similarities between multiple sequences. In this paper, a Quantum Algorithm for finding the optimal alignment between DNA sequences has been…
Directed acyclic graphs (DAGs) are commonly used to represent causal relationships among random variables in graphical models. Applications of these models arise in the study of physical, as well as biological systems, where directed edges…
Frequent pattern mining is widely used to find ``important'' or ``interesting'' patterns in data. While it is not easy to mathematically define such patterns, maximal frequent patterns are promising candidates, as frequency is a natural…
Let $G$ be a simple graph with $2n$ vertices and a perfect matching. The forcing number $f(G,M)$ of a perfect matching $M$ of $G$ is the smallest cardinality of a subset of $M$ that is contained in no other perfect matching of $G$. Among…
The reconfiguration graph $\mathcal{C}_k(G)$ for the $k$-colourings of a graph $G$ has a vertex for each proper $k$-colouring of $G$, and two vertices of $\mathcal{C}_k(G)$ are adjacent precisely when those $k$-colourings differ on a single…
Network flow is one of the most studied combinatorial optimization problems having innumerable applications. Any flow on a directed acyclic graph $G$ having $n$ vertices and $m$ edges can be decomposed into a set of $O(m)$ paths. In some…
Gutman and Wagner proposed the concept of the matching energy (ME) and pointed out that the chemical applications of ME go back to the 1970s. Let $G$ be a simple graph of order $n$ and $\mu_1,\mu_2,\ldots,\mu_n$ be the roots of its matching…
We propose a method to identify nonlinear acyclic networks in continuous time when the dynamics are located on the edges and all the nodes are excited. We show that it is necessary and sufficient to measure all the sinks to identify any…
We present a fully dynamic algorithm for maintaining approximate maximum weight matching in general weighted graphs. The algorithm maintains a matching ${\cal M}$ whose weight is at least $1/8 M^{*}$ where $M^{*}$ is the weight of the…
Consider an acyclic directed network $G$ with sources $S_1, S_2,..., S_l$ and distinct sinks $R_1, R_2,..., R_l$. For $i=1, 2,..., l$, let $c_i$ denote the min-cut between $S_i$ and $R_i$. Then, by Menger's theorem, there exists a group of…
Finding an Approximate Longest Common Substring (ALCS) within a given set $S=\{s_1,s_2,\ldots,s_m\}$ of $m \ge 2$ strings is a key problem in computational biology, such as identifying related mutations across multiple genetic sequences. We…
A subset $M$ of the edge set of a graph $G$ is an induced matching of $G$ if given any two $e_1,e_2 \in M$, none of the vertices on $e_1$ is adjacent to any of the vertices on $e_2$. Suppose that $MIM_G$, a positive integer, is the largest…