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Several biomedical language models have already been developed for clinical language inference. However, these models typically utilize general vocabularies and are trained on relatively small clinical corpora. We sought to evaluate the…

Computation and Language · Computer Science 2022-10-14 Madhumita Sushil , Dana Ludwig , Atul J. Butte , Vivek A. Rudrapatna

Biomedical text mining is becoming increasingly important as the number of biomedical documents and web data rapidly grows. Recently, word representation models such as BERT has gained popularity among researchers. However, it is difficult…

Computation and Language · Computer Science 2023-01-26 Ningyu Zhang , Qianghuai Jia , Kangping Yin , Liang Dong , Feng Gao , Nengwei Hua

The surge of pre-trained language models has begun a new era in the field of Natural Language Processing (NLP) by allowing us to build powerful language models. Among these models, Transformer-based models such as BERT have become…

Computation and Language · Computer Science 2021-10-12 Mehrdad Farahani , Mohammad Gharachorloo , Marzieh Farahani , Mohammad Manthouri

In recent years, researchers tend to pre-train ever-larger language models to explore the upper limit of deep models. However, large language model pre-training costs intensive computational resources and most of the models are trained from…

Computation and Language · Computer Science 2021-10-15 Cheng Chen , Yichun Yin , Lifeng Shang , Xin Jiang , Yujia Qin , Fengyu Wang , Zhi Wang , Xiao Chen , Zhiyuan Liu , Qun Liu

Pre-trained transformer language models (LMs) have in recent years become the dominant paradigm in applied NLP. These models have achieved state-of-the-art performance on tasks such as information extraction, question answering, sentiment…

Computation and Language · Computer Science 2025-04-14 Aidan Mannion , Thierry Chevalier , Didier Schwab , Lorraine Geouriot

Motivation: A perennial challenge for biomedical researchers and clinical practitioners is to stay abreast with the rapid growth of publications and medical notes. Natural language processing (NLP) has emerged as a promising direction for…

Computation and Language · Computer Science 2021-12-16 Robert Tinn , Hao Cheng , Yu Gu , Naoto Usuyama , Xiaodong Liu , Tristan Naumann , Jianfeng Gao , Hoifung Poon

Relying on large pretrained language models such as Bidirectional Encoder Representations from Transformers (BERT) for encoding and adding a simple prediction layer has led to impressive performance in many clinical natural language…

Computation and Language · Computer Science 2020-10-13 John Pougue Biyong , Bo Wang , Terry Lyons , Alejo J Nevado-Holgado

The transformer-based pre-trained language model BERT has helped to improve state-of-the-art performance on many natural language processing (NLP) tasks. Using the same architecture and parameters, we developed and evaluated a monolingual…

Computation and Language · Computer Science 2019-12-23 Wietse de Vries , Andreas van Cranenburgh , Arianna Bisazza , Tommaso Caselli , Gertjan van Noord , Malvina Nissim

Concept normalization in free-form texts is a crucial step in every text-mining pipeline. Neural architectures based on Bidirectional Encoder Representations from Transformers (BERT) have achieved state-of-the-art results in the biomedical…

Computation and Language · Computer Science 2021-01-26 Zulfat Miftahutdinov , Artur Kadurin , Roman Kudrin , Elena Tutubalina

In multilingual healthcare applications, the availability of domain-specific natural language processing(NLP) tools is limited, especially for low-resource languages. Although multilingual bidirectional encoder representations from…

Inspired by the success of the General Language Understanding Evaluation benchmark, we introduce the Biomedical Language Understanding Evaluation (BLUE) benchmark to facilitate research in the development of pre-training language…

Computation and Language · Computer Science 2019-06-19 Yifan Peng , Shankai Yan , Zhiyong Lu

In this work, we release COVID-Twitter-BERT (CT-BERT), a transformer-based model, pretrained on a large corpus of Twitter messages on the topic of COVID-19. Our model shows a 10-30% marginal improvement compared to its base model,…

Computation and Language · Computer Science 2020-05-18 Martin Müller , Marcel Salathé , Per E Kummervold

The purpose of the study is to investigate the relative effectiveness of four different sentiment analysis techniques: (1) unsupervised lexicon-based model using Sent WordNet; (2) traditional supervised machine learning model using logistic…

Computation and Language · Computer Science 2020-07-03 Shivaji Alaparthi , Manit Mishra

Machine learning methods have recently achieved high-performance in biomedical text analysis. However, a major bottleneck in the widespread application of these methods is obtaining the required large amounts of annotated training data,…

Machine Learning · Computer Science 2019-12-06 Xing Meng , Craig H. Ganoe , Ryan T. Sieberg , Yvonne Y. Cheung , Saeed Hassanpour

This paper describes a language representation model which combines the Bidirectional Encoder Representations from Transformers (BERT) learning mechanism described in Devlin et al. (2018) with a generalization of the Universal Transformer…

Computation and Language · Computer Science 2019-05-17 Alon Rozental , Zohar Kelrich , Daniel Fleischer

Attention-based models have shown significant improvement over traditional algorithms in several NLP tasks. The Transformer, for instance, is an illustrative example that generates abstract representations of tokens inputted to an encoder…

Computation and Language · Computer Science 2019-11-15 Dhanasekar Sundararaman , Vivek Subramanian , Guoyin Wang , Shijing Si , Dinghan Shen , Dong Wang , Lawrence Carin

We study the problem of incorporating prior knowledge into a deep Transformer-based model,i.e.,Bidirectional Encoder Representations from Transformers (BERT), to enhance its performance on semantic textual matching tasks. By probing and…

Computation and Language · Computer Science 2021-02-23 Tingyu Xia , Yue Wang , Yuan Tian , Yi Chang

Natural Language Processing (NLP) has witnessed a transformative leap with the advent of transformer-based architectures, which have significantly enhanced the ability of machines to understand and generate human-like text. This paper…

Computation and Language · Computer Science 2025-03-27 Tianhao Wu , Yu Wang , Ngoc Quach

Recently, pre-trained Transformer based language models, such as BERT, have shown great superiority over the traditional methods in many Natural Language Processing (NLP) tasks. However, the computational cost for deploying these models is…

Machine Learning · Computer Science 2022-03-28 Hanlin Tang , Xipeng Zhang , Kai Liu , Jianchen Zhu , Zhanhui Kang

Pre-trained Language Models (PLMs) have been widely used in various natural language processing (NLP) tasks, owing to their powerful text representations trained on large-scale corpora. In this paper, we propose a new PLM called PERT for…

Computation and Language · Computer Science 2022-03-15 Yiming Cui , Ziqing Yang , Ting Liu