Related papers: Bioformer: an efficient transformer language model…
We introduce Clinical ModernBERT, a transformer based encoder pretrained on large scale biomedical literature, clinical notes, and medical ontologies, incorporating PubMed abstracts, MIMIC IV clinical data, and medical codes with their…
Biomedical literature is a rapidly expanding field of science and technology. Classification of biomedical texts is an essential part of biomedicine research, especially in the field of biology. This work proposes the fine-tuned DistilBERT,…
Pre-trained Transformer-based models have achieved state-of-the-art performance for various Natural Language Processing (NLP) tasks. However, these models often have billions of parameters, and, thus, are too resource-hungry and…
Bidirectional Encoder Representations from Transformers (BERT) has recently achieved state-of-the-art performance on a broad range of NLP tasks including sentence classification, machine translation, and question answering. The BERT model…
We describe Bioformer team's participation in the multi-label topic classification task for COVID-19 literature (track 5 of BioCreative VII). Topic classification is performed using different BERT models (BioBERT, PubMedBERT, and…
Intent classification and slot filling are two essential tasks for natural language understanding. They often suffer from small-scale human-labeled training data, resulting in poor generalization capability, especially for rare words.…
Pre-trained Transformer-based models are achieving state-of-the-art results on a variety of Natural Language Processing data sets. However, the size of these models is often a drawback for their deployment in real production applications.…
The recent success of question answering systems is largely attributed to pre-trained language models. However, as language models are mostly pre-trained on general domain corpora such as Wikipedia, they often have difficulty in…
Transformer-based masked language models such as BERT, trained on general corpora, have shown impressive performance on downstream tasks. It has also been demonstrated that the downstream task performance of such models can be improved by…
Recent years have witnessed a substantial increase in the use of deep learning to solve various natural language processing (NLP) problems. Early deep learning models were constrained by their sequential or unidirectional nature, such that…
Bidirectional Encoder Representations from Transformers (BERT) has shown marvelous improvements across various NLP tasks, and consecutive variants have been proposed to further improve the performance of the pre-trained language models. In…
This study evaluated the effect of BioBERT in medical text processing for the task of medical named entity recognition. Through comparative experiments with models such as BERT, ClinicalBERT, SciBERT, and BlueBERT, the results showed that…
The large pre-trained BERT has achieved remarkable performance on Natural Language Processing (NLP) tasks but is also computation and memory expensive. As one of the powerful compression approaches, binarization extremely reduces the…
Language model pre-training has proven to be useful in learning universal language representations. As a state-of-the-art language model pre-training model, BERT (Bidirectional Encoder Representations from Transformers) has achieved amazing…
More recently, Bidirectional Encoder Representations from Transformers (BERT) was proposed and has achieved impressive success on many natural language processing (NLP) tasks such as question answering and language understanding, due mainly…
Recently, pre-trained Transformer based language models such as BERT and GPT, have shown great improvement in many Natural Language Processing (NLP) tasks. However, these models contain a large amount of parameters. The emergence of even…
Pretrained language models have served as important backbones for natural language processing. Recently, in-domain pretraining has been shown to benefit various domain-specific downstream tasks. In the biomedical domain, natural language…
Small and imbalanced datasets commonly seen in healthcare represent a challenge when training classifiers based on deep learning models. So motivated, we propose a novel framework based on BioBERT (Bidirectional Encoder Representations from…
Transformer-based language models, such as BERT and its variants, have achieved state-of-the-art performance in several downstream natural language processing (NLP) tasks on generic benchmark datasets (e.g., GLUE, SQUAD, RACE). However,…
Transformer language models (TLMs) are critical for most NLP tasks, but they are difficult to create for low-resource languages because of how much pretraining data they require. In this work, we investigate two techniques for training…