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Deep learning has become a powerful tool in computational biology, revolutionising the analysis and interpretation of biological data over time. In our article review, we delve into various aspects of deep learning in computational biology.…

Gene annotation addresses the problem of predicting unknown associations between gene and functions (e.g., biological processes) of a specific organism. Despite recent advances, the cost and time demanded by annotation procedures that rely…

Machine Learning · Computer Science 2022-05-02 Miguel Romero , Oscar Ramírez , Jorge Finke , Camilo Rocha

In recent years, Reinforcement Learning (RL) has emerged as a powerful tool for solving a wide range of problems, including decision-making and genomics. The exponential growth of raw genomic data over the past two decades has exceeded the…

We assess the potential of quantum computing to accelerate computation of central tasks in genomics, focusing on often-neglected theoretical limitations. We discuss state-of-the-art challenges of quantum search, optimization, and machine…

Quantum Physics · Physics 2026-01-09 Aurora Maurizio , Guglielmo Mazzola

Much research is done on data analytics and machine learning. In industrial processes large amounts of data are available and many researchers are trying to work with this data. In practical approaches one finds many pitfalls restraining…

Systems and Control · Electrical Eng. & Systems 2021-01-27 Tilman Klaeger , Sebastian Gottschall , Lukas Oehm

This chapter aims to inform a practitioner about current methods for predicting potential distributions of invasive species. It mostly addresses single species models, covering the conceptual bases, touching on mechanistic models, and then…

Populations and Evolution · Quantitative Biology 2015-07-31 Jane Elith

This paper introduces a new approach to the long-term tracking of an object in a challenging environment. The object is a cow and the environment is an enclosure in a cowshed. Some of the key challenges in this domain are a cluttered…

Computer Vision and Pattern Recognition · Computer Science 2017-03-31 Aram Ter-Sarkisov , Robert Ross , John Kelleher

Our goal in this paper is to automatically extract a set of decision rules (rule set) that best explains a classification data set. First, a large set of decision rules is extracted from a set of decision trees trained on the data set. The…

Neural and Evolutionary Computing · Computer Science 2022-09-19 Paul-Amaury Matt , Rosina Ziegler , Danilo Brajovic , Marco Roth , Marco F. Huber

The problem that we want to solve in this project of the subject of Data Structures and Algorithms, is to decipher some images, which have in them animals, being more specific, bovine animals; in which it is necessary to identify if the…

Computer Vision and Pattern Recognition · Computer Science 2021-11-24 David Agudelo Tapias , Simon Marin Giraldo y Mauricio Toro Bermudez

The research area of algorithms with predictions has seen recent success showing how to incorporate machine learning into algorithm design to improve performance when the predictions are correct, while retaining worst-case guarantees when…

Machine Learning · Computer Science 2022-12-06 Michael Dinitz , Sungjin Im , Thomas Lavastida , Benjamin Moseley , Sergei Vassilvitskii

The primary aim of automated performance improvement is to reduce the running time of programs while maintaining (or improving on) functionality. In this paper, Genetic Programming is used to find performance improvements in regular…

Neural and Evolutionary Computing · Computer Science 2017-04-14 Brendan Cody-Kenny , Michael Fenton , Adrian Ronayne , Eoghan Considine , Thomas McGuire , Michael O'Neill

In classification problems, models must predict a class label based on the input data features. However, class labels are organized hierarchically in many datasets. While a classification task is often defined at a specific level of this…

Machine Learning · Computer Science 2025-09-08 Davide Pirovano , Federico Milanesio , Michele Caselle , Piero Fariselli , Matteo Osella

Research is facing a reproducibility crisis, in which the results and findings of many studies are difficult or even impossible to reproduce. This is also the case in machine learning (ML) and artificial intelligence (AI) research. Often,…

Machine Learning · Computer Science 2023-07-21 Harald Semmelrock , Simone Kopeinik , Dieter Theiler , Tony Ross-Hellauer , Dominik Kowald

Genetic programming (GP) is an evolutionary computation technique to solve problems in an automated, domain-independent way. Rather than identifying the optimum of a function as in more traditional evolutionary optimization, the aim of GP…

Neural and Evolutionary Computing · Computer Science 2019-05-15 Andrei Lissovoi , Pietro S. Oliveto

In this paper, we apply genetic algorithms to the field of electoral studies. Forecasting election results is one of the most exciting and demanding tasks in the area of market research, especially due to the fact that decisions have to be…

Neural and Evolutionary Computing · Computer Science 2014-01-21 Ronald Hochreiter , Christoph Waldhauser

The problem of controlling complex networks is of interest to disciplines ranging from biology to swarm robotics. However, controllability can be too strict a condition, failing to capture a range of desirable behaviors. Herdability, which…

Systems and Control · Computer Science 2018-05-01 Sebastian F. Ruf , Magnus Egersted , Jeff S. Shamma

Deep learning constitutes a recent, modern technique for image processing and data analysis, with promising results and large potential. As deep learning has been successfully applied in various domains, it has recently entered also the…

Machine Learning · Computer Science 2018-08-01 Andreas Kamilaris , Francesc X. Prenafeta-Boldu

Matrix completion is one of the key problems in signal processing and machine learning. In recent years, deep-learning-based models have achieved state-of-the-art results in matrix completion. Nevertheless, they suffer from two drawbacks:…

Machine Learning · Computer Science 2018-12-05 Duc Minh Nguyen , Evaggelia Tsiligianni , Nikos Deligiannis

If you want to tell people the truth, make them laugh, otherwise they'll kill you. (source unclear) Machine learning and deep learning are the technologies of the day for developing intelligent automatic systems. However, a key hurdle for…

Machine Learning · Computer Science 2019-01-08 Fayyaz Minhas , Amina Asif , Asa Ben-Hur

Data collection is a major bottleneck in machine learning and an active research topic in multiple communities. There are largely two reasons data collection has recently become a critical issue. First, as machine learning is becoming more…

Machine Learning · Computer Science 2019-08-13 Yuji Roh , Geon Heo , Steven Euijong Whang