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We provide a data structure for maintaining an embedding of a graph on a surface (represented combinatorially by a permutation of edges around each vertex) and computing generators of the fundamental group of the surface, in amortized time…

Data Structures and Algorithms · Computer Science 2007-05-23 David Eppstein

In this paper we develop a novel Topological Data Analysis (TDA) approach for studying graph representations of time series of dynamical systems. Specifically, we show how persistent homology, a tool from TDA, can be used to yield a…

Chaotic Dynamics · Physics 2020-01-28 Audun Myers , Elizabeth Munch , Firas A. Khasawneh

Inferring the underlying graph topology that characterizes structured data is pivotal to many graph-based models when pre-defined graphs are not available. This paper focuses on learning graphs in the case of sequential data in dynamic…

Machine Learning · Computer Science 2022-02-25 Xiang Zhang

We extend the theory of Cellular Automata to arbitrary, time-varying graphs. In other words we formalize, and prove theorems about, the intuitive idea of a labelled graph which evolves in time - but under the natural constraint that…

Discrete Mathematics · Computer Science 2012-05-09 Pablo Arrighi , Gilles Dowek

Hypergraphs naturally represent higher-order interactions, which persistently appear from social interactions to neural networks and other natural systems. Although their importance is well recognized, a theoretical framework to describe…

Physics and Society · Physics 2020-05-25 Guilherme Ferraz de Arruda , Michele Tizzani , Yamir Moreno

This paper introduces graphemes for constructing and analyzing stochastic processes that describe the evolution of large dynamic graphs. Unlike graphons, which capture the static properties of dense graphs via exchangeability or subgraph…

Probability · Mathematics 2025-04-16 Andreas Greven , Frank den Hollander , Anton Klimovsky , Anita Winter

Graphs are widespread data structures used to model a wide variety of problems. The sheer amount of data to be processed has prompted the creation of a myriad of systems that help us cope with massive scale graphs. The pressure to deliver…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-10-09 Luis M. Vaquero , Felix Cuadrado , Matei Ripeanu

In the study of dynamical systems on networks/graphs, a key theme is how the network topology influences stability for steady states or synchronized states. Ideally, one would like to derive conditions for stability or instability that…

Dynamical Systems · Mathematics 2020-07-01 Raffaella Mulas , Christian Kuehn , Jürgen Jost

In this work we introduce Dynamic Random Geometric Graphs as a basic rough model for mobile wireless sensor networks, where communication distances are set to the known threshold for connectivity of static random geometric graphs. We…

Discrete Mathematics · Computer Science 2007-05-23 Josep Diaz , Dieter Mitsche , Xavier Perez

Graph Neural Networks (GNNs) resurge as a trending research subject owing to their impressive ability to capture representations from graph-structured data. However, the black-box nature of GNNs presents a significant challenge in terms of…

Machine Learning · Computer Science 2023-10-26 Tianchun Wang , Dongsheng Luo , Wei Cheng , Haifeng Chen , Xiang Zhang

Dynamic complexity is concerned with updating the output of a problem when the input is slightly changed. We study the dynamic complexity of model checking a fixed monadic second-order formula over evolving subgraphs of a fixed maximal…

Computational Complexity · Computer Science 2017-02-20 Patricia Bouyer-Decitre , Vincent Jugé , Nicolas Markey

We propose a novel method for topological analysis of unweighted graphs which is based on \textit{persistent homology}. The proposed method maps the input graph to a complete weighted graph where the weighting function maps each edge to a…

Algebraic Topology · Mathematics 2020-07-31 Padraig Corcoran

Visibility algorithms are a family of geometric and ordering criteria by which a real-valued time series of N data is mapped into a graph of N nodes. This graph has been shown to often inherit in its topology non-trivial properties of the…

Chaotic Dynamics · Physics 2018-07-04 Lucas Lacasa , Wolfram Just

Dynamic networks, a.k.a. graph streams, consist of a set of vertices and a collection of timestamped interaction events (i.e., temporal edges) between vertices. Temporal motifs are defined as classes of (small) isomorphic induced subgraphs…

Methodology · Statistics 2022-02-23 Xiaojing Zhu , Eric D. Kolaczyk

Diffusion models achieve state-of-the-art performance in generating realistic objects and have been successfully applied to images, text, and videos. Recent work has shown that diffusion can also be defined on graphs, including graph…

Machine Learning · Computer Science 2023-02-09 Alex M. Tseng , Nathaniel Diamant , Tommaso Biancalani , Gabriele Scalia

Graph processing has become an important part of various areas of computing, including machine learning, medical applications, social network analysis, computational sciences, and others. A growing amount of the associated graph processing…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-08-01 Maciej Besta , Marc Fischer , Vasiliki Kalavri , Michael Kapralov , Torsten Hoefler

Graphs are ubiquitous in social networks and biochemistry, where Graph Neural Networks (GNN) are the state-of-the-art models for prediction. Graphs can be evolving and it is vital to formally model and understand how a trained GNN responds…

Machine Learning · Computer Science 2024-03-12 Yazheng Liu , Xi Zhang , Sihong Xie

We study directed random graphs (random graphs whose edges are directed) as they evolve in discrete time by the addition of nodes and edges. For two distinct evolution strategies, one that forces the graph to a condition of near acyclicity…

Statistical Mechanics · Physics 2007-05-23 Valmir C. Barbosa , Raul Donangelo , Sergio R. Souza

Dynamically changing graphs are used in many applications of graph algorithms. The scope of these graphs are in graphics, communication networks and in VLSI designs where graphs are subjected to change, such as addition and deletion of…

Data Structures and Algorithms · Computer Science 2012-10-01 Megha Tyagi , Deepak Garg

Where graphs are used for modelling and specifying systems, consistency is an important concern. To be a valid model of a system, the graph structure must satisfy a number of constraints. To date, consistency has primarily been viewed as a…

Logic in Computer Science · Computer Science 2021-11-02 Jens Kosiol , Daniel Strüber , Gabriele Taentzer , Steffen Zschaler
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