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ArQTiC is an open-source, full-stack software package built for the simulations of materials on quantum computers. It currently can simulate materials that can be modeled by any Hamiltonian derived from a generic, one-dimensional,…

Quantum Physics · Physics 2021-06-10 Lindsay Bassman , Connor Powers , Wibe A. de Jong

We present a Python package called Modular Petri Net Assembly Toolkit (MPAT) that empowers users to easily create large-scale, modular Petri Nets for various spatial configurations, including extensive spatial grids or those derived from…

Mathematical Software · Computer Science 2025-07-03 Stefano Chiaradonna , Petar Jevtic , Beckett Sterner

This article documents the HashKitty platform, a distributed solution for password analysis based on the hashcat tool, designed to improve efficiency in both offensive and defensive security operations. The main objectives of this work are…

Cryptography and Security · Computer Science 2025-05-12 Pedro Antunes , Tomás Santos , Daniel Fuentes , Luís Frazão

We present the Quantum Hamiltonian Analysis Toolkit (QHAT), a newly developed application that provides a user-friendly interface for studying Hamiltonians and performing Hamiltonian simulation on fault-tolerant quantum computers. QHAT…

This article describes a geometric partitioning software that can be used for quick computation of data partitions on many-core HPC machines. It is most suited for dynamic applications with load distributions that vary with time.…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-08-19 Aparna Sasidharan

We present the Open MatSci ML Toolkit: a flexible, self-contained, and scalable Python-based framework to apply deep learning models and methods on scientific data with a specific focus on materials science and the OpenCatalyst Dataset. Our…

Machine Learning · Computer Science 2023-09-01 Santiago Miret , Kin Long Kelvin Lee , Carmelo Gonzales , Marcel Nassar , Matthew Spellings

Data science pipelines commonly utilize dataframe and array operations for tasks such as data preprocessing, analysis, and machine learning. The most popular tools for these tasks are pandas and NumPy. However, these tools are limited to…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-03-20 Weizheng Lu , Kaisheng He , Xuye Qin , Chengjie Li , Zhong Wang , Tao Yuan , Xia Liao , Feng Zhang , Yueguo Chen , Xiaoyong Du

The successful integration of high-temperature superconductors (HTS) into modern technologies requires consistent, accessible, and comprehensive material data, a need that is currently unmet due to the fragmented and incomplete nature of…

Superconductivity · Physics 2025-06-03 Pablo Cayado , João Rosas , João Murta-Pina , Harold S. Ruiz

The Open Knowledgebase of Interatomic Models (OpenKIM) is an NSF Science Gateway that archives fully functional computer implementations of interatomic models (potentials and force fields) and simulation codes that use them to compute…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-05-31 Daniel S. Karls , Steven M. Clark , Brendon A. Waters , Ryan S. Elliott , Ellad B. Tadmor

MPI applications matter. However, with the advent of many-core processors, traditional MPI applications are challenged to achieve satisfactory performance. This is due to the inability of these applications to respond to load imbalances, to…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-12-20 Jan Ciesko , Pedro J. Martínez-Ferrer , Raúl Peñacoba Veigas , Xavier Teruel , Vicenç Beltran

Industrial recommender systems critically depend on high-quality ranking models. However, traditional pipelines still rely on manual feature engineering and scenario-specific architectures, which hinder cross-scenario transfer and…

Information Retrieval · Computer Science 2025-10-20 Xianyang Qi , Yuan Tian , Zhaoyu Hu , Zhirui Kuai , Chang Liu , Hongxiang Lin , Lei Wang

We introduce Diffuse, a system that dynamically performs task and kernel fusion in distributed, task-based runtime systems. The key component of Diffuse is an intermediate representation of distributed computation that enables the necessary…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-12-17 Rohan Yadav , Shiv Sundram , Wonchan Lee , Michael Garland , Michael Bauer , Alex Aiken , Fredrik Kjolstad

There are many science applications that require scalable task-level parallelism and support for flexible execution and coupling of ensembles of simulations. Most high-performance system software and middleware, however, are designed to…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-06-29 Vivekanandan Balasubramanian , Antons Treikalis , Ole Weidner , Shantenu Jha

Large-scale atomistic simulations are essential to bridge computational materials and chemistry to realistic materials and drug discovery applications. In the past few years, rapid developments of machine learning interatomic potentials…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-02-03 Kevin Han , Bowen Deng , Amir Barati Farimani , Gerbrand Ceder

Compiling high-level programs to target high-speed packet-processing pipelines is a challenging combinatorial optimization problem. The compiler must configure the pipeline's resources to match the high-level semantics of the program, while…

Networking and Internet Architecture · Computer Science 2022-11-22 Xiangyu Gao , Divya Raghunathan , Ruijie Fang , Tao Wang , Xiaotong Zhu , Anirudh Sivaraman , Srinivas Narayana , Aarti Gupta

In the era of data-driven science, conducting computational experiments that involve analysing large datasets using heterogeneous computational clusters, is part of the everyday routine for many scientists. Moreover, to ensure the…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-03-23 Thanasis Vergoulis , Konstantinos Zagganas , Loukas Kavouras , Martin Reczko , Stelios Sartzetakis , Theodore Dalamagas

Electromagnetic simulations form an indispensable part of the design and optimization process for superconducting quantum devices. Although several commercial platforms exist, open-source alternatives optimized for high-performance…

Understanding decision-making in clinical environments is of paramount importance if we are to bring the strengths of machine learning to ultimately improve patient outcomes. Several factors including the availability of public data, the…

Machine Learning · Computer Science 2022-03-15 Alex J. Chan , Ioana Bica , Alihan Huyuk , Daniel Jarrett , Mihaela van der Schaar

Motivation: Complex computational pipelines are becoming a staple of modern scientific research. Often these pipelines are resource intensive and require days of computing time. In such cases, it makes sense to run them over distributed…

Software Engineering · Computer Science 2015-01-28 David K. Brown , Thommas M. Musyoka , David L. Penkler , Özlem Tastan Bishop

We introduce DeePKS-kit, an open-source software package for developing machine learning based energy and density functional models. DeePKS-kit is interfaced with PyTorch, an open-source machine learning library, and PySCF, an ab initio…

Chemical Physics · Physics 2021-06-23 Yixiao Chen , Linfeng Zhang , Han Wang , Weinan E