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Molecular graphs generally contain subgraphs (known as groups) that are identifiable and significant in composition, functionality, geometry, etc. Flat latent representations (node embeddings or graph embeddings) fail to represent, and…

Machine Learning · Computer Science 2019-04-05 Daniel T. Chang

Perfect code in Cayley graphs and Cayley sum graphs is studied extensively in recent years. In this paper, we consider perfect code in generalized Cayley graphs.

Combinatorics · Mathematics 2024-01-23 Liao Qianfen , Liu Weijun

A mixed graph can be seen as a type of digraph containing some edges (two opposite arcs). Here we introduce the concept of sequence mixed graphs, which is a generalization of both sequence graphs and iterated line digraphs. These structures…

Combinatorics · Mathematics 2016-10-13 C. Dalfó , M. A. Fiol , N. López

In this paper we introduce the concept of generalized d-graph (admitting cycles) as special dependency-graphs for modelling dynamic programming (DP) problems. We describe the d-graph versions of three famous single-source shortest…

Data Structures and Algorithms · Computer Science 2010-12-07 Zoltán Kátai

We describe the FeynEdit tool for drawing Feynman diagrams. Input and output is done using the LaTeX macros of FeynArts, which also implies that diagrams drawn by FeynArts can be edited with FeynEdit. The LaTeX code can be conveniently…

High Energy Physics - Phenomenology · Physics 2008-11-26 T. Hahn , P. Lang

We consider certain respondent-driven sampling procedures on dense graphs. We show that if the sequence of the vertex-sets is ergodic then the limiting graph can be expressed in terms of the original dense graph via a transformation related…

Probability · Mathematics 2016-09-29 Siva Athreya , Adrian Röllin

We define a range of new coarse geometric invariants based on various graph-theoretic measures of complexity for finite graphs, including: treewidth, pathwidth, cutwidth and bandwidth. We prove that, for bounded degree graphs, these…

Metric Geometry · Mathematics 2025-08-07 Wanying Huang , David Hume , Samuel J. Kelly , Ryan Lam

In this paper, we introduce a new approach for drawing diagrams that have applications in software visualization. Our approach is to use a technique we call confluent drawing for visualizing non-planar diagrams in a planar way. This…

Computational Geometry · Computer Science 2007-05-23 Matthew Dickerson , David Eppstein , Michael T. Goodrich , Jeremy Meng

We develop some aspects of a general theory of presentations of subshifts by labelled directed graphs, in particular by compact graphs. Also considered are synchronization properties of subshifts that lead to presentations by countable…

Dynamical Systems · Mathematics 2012-09-11 Wolfgang Krieger

Interpretable interactive visual pattern discovery in lossless 3D visualization is a promising way to advance machine learning. It enables end users who are not data scientists to take control of the model development process as a…

Human-Computer Interaction · Computer Science 2024-03-21 Joshua Martinez , Boris Kovalerchuk

We present a three-dimensional steerable optical tweezer system based on two pairs of acousto-optic deflectors. Radio frequencies used to steer the optical tweezers are generated by direct digital synthesis and multiple cross beam dipole…

Quantum Gases · Physics 2018-10-17 C. S. Chisholm , R. Thomas , A. B. Deb , N. Kjærgaard

The inductive biases of graph representation learning algorithms are often encoded in the background geometry of their embedding space. In this paper, we show that general directed graphs can be effectively represented by an embedding model…

Machine Learning · Statistics 2021-06-17 Aaron Sim , Maciej Wiatrak , Angus Brayne , Páidí Creed , Saee Paliwal

We present an $O(\log k)$-approximation for both the edge-weighted and node-weighted versions of \DST in planar graphs where $k$ is the number of terminals. We extend our approach to \MDST (in general graphs \MDST and \DST are easily seen…

Data Structures and Algorithms · Computer Science 2023-04-25 Zachary Friggstad , Ramin Mousavi

An arc of a graph is an oriented edge and a 3-arc is a 4-tuple $(v,u,x,y)$ of vertices such that both $(v,u,x)$ and $(u,x,y)$ are paths of length two. The 3-arc graph of a graph $G$ is defined to have vertices the arcs of $G$ such that two…

Combinatorics · Mathematics 2014-01-03 Guangjun Xu , Sanming Zhou

Given a graph G, its triangular line graph is the graph T(G) with vertex set consisting of the edges of G and adjacencies between edges that are incident in G as well as being within a common triangle. Graphs with a representation as the…

Combinatorics · Mathematics 2010-07-08 Pranav Anand , Henry Escuadro , Ralucca Gera , Stephen G. Hartke , Derrick Stolee

We investigate graphs that have characteristic-dependent well-covered dimension and show how more of these graphs can be constructed from known ones.

Combinatorics · Mathematics 2015-06-02 Joseph Burdick , Oscar Vega

D3 is arguably the most popular tool for implementing web based visualizations. Yet D3 has a steep learning curve that may hinder its adoption and continued use. To simplify the process of programming D3 visualizations, we must first…

Human-Computer Interaction · Computer Science 2023-02-14 Hannah Bako , Alisha Varma , Anuoluwapo Faboro , Mahreen Haider , Favour Nerrise , Bissaka Kenah , Leilani Battle

Timeslices are often used to draw and visualize dynamic graphs. While timeslices are a natural way to think about dynamic graphs, they are routinely imposed on continuous data. Often, it is unclear how many timeslices to select: too few…

Social and Information Networks · Computer Science 2017-09-04 Paolo Simonetto , Daniel Archambault , Stephen Kobourov

A k-digraph is an orientation of a multi-graph that is without loops and contains at most k edges between any pair of distinct vertices. We obtain necessary and sufficient conditions for a sequence of non-negative integers in non-decreasing…

Combinatorics · Mathematics 2007-05-23 S. Pirzada , U. Samee

Most of the literature on spanners focuses on building the graph from scratch. This paper instead focuses on adding edges to improve an existing graph. A major open problem in this field is: given a graph embedded in a metric space, and a…

Computational Geometry · Computer Science 2022-12-20 Joachim Gudmundsson , Sampson Wong