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NeuralKG is an open-source Python-based library for diverse representation learning of knowledge graphs. It implements three different series of Knowledge Graph Embedding (KGE) methods, including conventional KGEs, GNN-based KGEs, and…

Causal inference aids researchers in discovering cause-and-effect relationships, leading to scientific insights. Accurate causal estimation requires identifying confounding variables to avoid false discoveries. Pearl's causal model uses…

Machine Learning · Computer Science 2025-04-22 Anna Zeng , Michael Cafarella , Batya Kenig , Markos Markakis , Brit Youngmann , Babak Salimi

BondGraphTools is a Python library for scripted modelling of complex multi-physics systems. In contrast to existing modelling solutions, BondGraphTools is based upon the well established bond graph methodology, provides a programming…

Systems and Control · Electrical Eng. & Systems 2019-06-27 Peter Cudmore , Peter J. Gawthrop , Michael Pan , Edmund J. Crampin

The use of Internet in the every day life has pushed its evolution in a very fast way. The heterogeneity of the equipments supporting its networks, as well as the different devices from which it can be accessed, have participated in…

Networking and Internet Architecture · Computer Science 2014-04-23 Hadrien Hours , Ernst Biersack , Patrick Loiseau

In this work, we discover that causal inference provides a promising approach to capture heterophilic message-passing in Graph Neural Network (GNN). By leveraging cause-effect analysis, we can discern heterophilic edges based on asymmetric…

Machine Learning · Computer Science 2024-11-28 Botao Wang , Jia Li , Heng Chang , Keli Zhang , Fugee Tsung

Causal diagrams are logic and graphical tools that depict assumptions about presumed causal relations. Such diagrams have proven effective in tackling a variety of problems in social sciences and epidemiology research yet remain foreign to…

Applications · Statistics 2023-06-29 M. Z. Naser

We introduce a visual analysis method for multiple causal graphs with different outcome variables, namely, multi-outcome causal graphs. Multi-outcome causal graphs are important in healthcare for understanding multimorbidity and…

Machine Learning · Computer Science 2026-05-01 Mengjie Fan , Jinlu Yu , Daniel Weiskopf , Nan Cao , Huai-Yu Wang , Liang Zhou

In addition to efficient statistical estimators of a treatment's effect, successful application of causal inference requires specifying assumptions about the mechanisms underlying observed data and testing whether they are valid, and to…

Methodology · Statistics 2020-11-10 Amit Sharma , Emre Kiciman

Probabilistic topic modeling is a popular and powerful family of tools for uncovering thematic structure in large sets of unstructured text documents. While much attention has been directed towards the modeling algorithms and their various…

Information Retrieval · Computer Science 2014-12-01 Samuel Rönnqvist , Xiaolu Wang , Peter Sarlin

Graph data is becoming increasingly prevalent due to the growing demand for relational insights in AI across various domains. Organizations regularly use graph data to solve complex problems involving relationships and connections. Causal…

Machine Learning · Computer Science 2026-02-23 Simi Job , Xiaohui Tao , Taotao Cai , Haoran Xie , Jianming Yong , Xin Wang

The problem of accurately measuring the similarity between graphs is at the core of many applications in a variety of disciplines. Graph kernels have recently emerged as a promising approach to this problem. There are now many kernels, each…

We suggest an enhancement to structural coding through the use of (a) causally bound codes, (b) basic constructs of graph theory and (c) statistics. As is the norm with structural coding, the codes are collected into categories. The…

Digital Libraries · Computer Science 2021-07-30 Etienne-Victor Depasquale , Humaira Abdul Salam , Franco Davoli

Causal world models are systems that can answer counterfactual questions about an environment of interest, i.e. predict how it would have evolved if an arbitrary subset of events had been realized differently. It requires understanding the…

Artificial Intelligence · Computer Science 2025-05-21 Gaël Gendron , Jože M. Rožanec , Michael Witbrock , Gillian Dobbie

In recent years, a growing number of method and application works have adapted and applied the causal-graphical-model framework to time series data. Many of these works employ time-resolved causal graphs that extend infinitely into the past…

Statistics Theory · Mathematics 2023-10-10 Andreas Gerhardus , Jonas Wahl , Sofia Faltenbacher , Urmi Ninad , Jakob Runge

Many applications, ranging from natural to social sciences, rely on graphlet analysis for the intuitive and meaningful characterization of networks employing micro-level structures as building blocks. However, it has not been thoroughly…

Social and Information Networks · Computer Science 2023-06-06 Colin Cleveland , Chin-Yen Lee , Shen-Fu Tsai , Wei-Hsuan Yu , Hsuan-Wei Lee

Causal discovery, the task of inferring causal structure from data, has the potential to uncover mechanistic insights from biological experiments, especially those involving perturbations. However, causal discovery algorithms over larger…

Machine Learning · Computer Science 2025-04-01 Menghua Wu , Yujia Bao , Regina Barzilay , Tommi Jaakkola

Graphs are a powerful tool for representing and analyzing unstructured, non-Euclidean data ubiquitous in the healthcare domain. Two prominent examples are molecule property prediction and brain connectome analysis. Importantly, recent works…

Machine Learning · Computer Science 2022-04-04 Kamilia Mullakaeva , Luca Cosmo , Anees Kazi , Seyed-Ahmad Ahmadi , Nassir Navab , Michael M. Bronstein

Real-world complex networks are usually being modeled as graphs. The concept of graphs assumes that the relations within the network are binary (for instance, between pairs of nodes); however, this is not always true for many real-life…

Social and Information Networks · Computer Science 2020-05-06 Alessia Antelmi , Gennaro Cordasco , Bogumił Kamiński , Paweł Prałat , Vittorio Scarano , Carmine Spagnuolo , Przemyslaw Szufel

Causal discovery from observational data is a challenging task that can only be solved up to a set of equivalent solutions, called an equivalence class. Such classes, which are often large in size, encode uncertainties about the orientation…

Machine Learning · Computer Science 2022-03-01 Philippe Brouillard , Perouz Taslakian , Alexandre Lacoste , Sebastien Lachapelle , Alexandre Drouin

Scikit-network is a Python package inspired by scikit-learn for the analysis of large graphs. Graphs are represented by their adjacency matrix in the sparse CSR format of SciPy. The package provides state-of-the-art algorithms for ranking,…

Social and Information Networks · Computer Science 2020-09-17 Thomas Bonald , Nathan de Lara , Quentin Lutz , Bertrand Charpentier
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