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Temporal knowledge graph reasoning (TKGR) is increasingly gaining attention for its ability to extrapolate new events from historical data, thereby enriching the inherently incomplete temporal knowledge graphs. Existing graph-based…

Machine Learning · Computer Science 2025-01-27 Jinze Sun , Yongpan Sheng , Lirong He , Yongbin Qin , Ming Liu , Tao Jia

Causal modelling frameworks link observable correlations to causal explanations, which is a crucial aspect of science. These models represent causal relationships through directed graphs, with vertices and edges denoting systems and…

Quantum Physics · Physics 2025-02-10 Carla Ferradini , Victor Gitton , V. Vilasini

In this guide, we present how to perform constraint-based causal discovery using three popular software packages: pcalg (with add-ons tpc and micd), bnlearn, and TETRAD. We focus on how these packages can be used with observational data and…

Applications · Statistics 2023-12-20 Ryan M. Andrews , Ronja Foraita , Vanessa Didelez , Janine Witte

Causal discovery aims to uncover cause-and-effect relationships encoded in causal graphs by leveraging observational, interventional data, or their combination. The majority of existing causal discovery methods are developed assuming…

Machine Learning · Computer Science 2024-06-25 Muhammad Qasim Elahi , Lai Wei , Murat Kocaoglu , Mahsa Ghasemi

The use of generative AI to create text descriptions from graphs has mostly focused on knowledge graphs, which connect concepts using facts. In this work we explore the capability of large pretrained language models to generate text from…

Computation and Language · Computer Science 2024-04-09 Atharva Phatak , Vijay K. Mago , Ameeta Agrawal , Aravind Inbasekaran , Philippe J. Giabbanelli

We present DoWhy-GCM, an extension of the DoWhy Python library, which leverages graphical causal models. Unlike existing causality libraries, which mainly focus on effect estimation, DoWhy-GCM addresses diverse causal queries, such as…

We propose a novel framework for generating causal graphs from narrative texts, bridging high-level causality and detailed event-specific relationships. Our method first extracts concise, agent-centered vertices using large language model…

Computation and Language · Computer Science 2025-04-11 Zehan Li , Ruhua Pan , Xinyu Pi

Causal theory is now widely developed with many applications to medicine and public health. However within the discipline of reliability, although causation is a key concept in this field, there has been much less theoretical attention. In…

Artificial Intelligence · Computer Science 2020-02-17 Xuewen Yu , Jim Q. Smith , Linda Nichols

We introduce cyclinbayes, an open-source R package for discovering linear causal relationships with both acyclic and cyclic structures. The package employs scalable Bayesian approaches with spike-and-slab priors to learn directed acyclic…

Computation · Statistics 2026-02-25 Robert Lee , Raymond K. W. Wong , Yang Ni

With the advent of high-throughput sequencing (HTS) in molecular biology and medicine, the need for scalable statistical solutions for modeling complex biological systems has become of critical importance. The increasing number of platforms…

Molecular Networks · Quantitative Biology 2022-10-19 Fernando Palluzzi , Mario Grassi

Causal deep learning (CDL) is a new and important research area in the larger field of machine learning. With CDL, researchers aim to structure and encode causal knowledge in the extremely flexible representation space of deep learning…

Machine Learning · Computer Science 2022-12-05 Jeroen Berrevoets , Krzysztof Kacprzyk , Zhaozhi Qian , Mihaela van der Schaar

Parametric causal modelling techniques rarely provide functionality for counterfactual estimation, often at the expense of modelling complexity. Since causal estimations depend on the family of functions used to model the data, simplistic…

Machine Learning · Statistics 2020-06-16 Álvaro Parafita , Jordi Vitrià

Pykg2vec is an open-source Python library for learning the representations of the entities and relations in knowledge graphs. Pykg2vec's flexible and modular software architecture currently implements 16 state-of-the-art knowledge graph…

Artificial Intelligence · Computer Science 2019-06-12 Shih Yuan Yu , Sujit Rokka Chhetri , Arquimedes Canedo , Palash Goyal , Mohammad Abdullah Al Faruque

Hypergraphs, or generalization of graphs such that edges can contain more than two nodes, have become increasingly prominent in understanding complex network analysis. Unlike graphs, hypergraphs have relatively few supporting platforms, and…

Mathematical Software · Computer Science 2024-01-09 Quoc Chuong Nguyen , Trung Kien Le

In knowledge-intensive tasks, especially in high-stakes domains like medicine and law, it is critical not only to retrieve relevant information but also to provide causal reasoning and explainability. Large language models (LLMs) have…

Artificial Intelligence · Computer Science 2025-03-18 Hang Luo , Jian Zhang , Chujun Li

We introduce pygrank, an open source Python package to define, run and evaluate node ranking algorithms. We provide object-oriented and extensively unit-tested algorithm components, such as graph filters, post-processors, measures,…

Machine Learning · Computer Science 2021-10-19 Emmanouil Krasanakis , Symeon Papadopoulos , Ioannis Kompatsiaris , Andreas Symeonidis

Many financial jobs rely on news to learn about causal events in the past and present, to make informed decisions and predictions about the future. With the ever-increasing amount of news available online, there is a need to automate the…

Computation and Language · Computer Science 2023-08-01 Fiona Anting Tan , Debdeep Paul , Sahim Yamaura , Miura Koji , See-Kiong Ng

Causality is essential in scientific research, enabling researchers to interpret true relationships between variables. These causal relationships are often represented by causal graphs, which are directed acyclic graphs. With the recent…

Computation and Language · Computer Science 2025-02-19 Ivaxi Sheth , Bahare Fatemi , Mario Fritz

Classical machine learning techniques often struggle with overfitting and unreliable predictions when exposed to novel conditions. Introducing causality into the modelling process offers a promising way to mitigate these challenges by…

Computational Engineering, Finance, and Science · Computer Science 2025-05-28 David Zapata Gonzalez , Marcel Meyer , Oliver Mueller

Research on causal effects often relies on synthetic data due to the scarcity of real-world datasets with ground-truth effects. Since current data-generating tools do not always meet all requirements for state-of-the-art research, ad-hoc…

Artificial Intelligence · Computer Science 2024-05-24 Andreas W M Sauter , Erman Acar , Aske Plaat