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Recovering a tree that represents the evolutionary history of a group of species is a key task in phylogenetics. Performing this task using sequence data from multiple genetic markers poses two key challenges. The first is the discordance…

Populations and Evolution · Quantitative Biology 2026-03-12 Ortal Reshef , Ofer Glassman , Or Zuk , Yariv Aizenbud , Boaz Nadler , Ariel Jaffe

Expansion property of a graph refers to its strong connectivity as well as sparseness. It has been reported that deep neural networks can be pruned to a high degree of sparsity while maintaining their performance. Such pruning is essential…

Machine Learning · Computer Science 2024-03-19 Suryam Arnav Kalra , Arindam Biswas , Pabitra Mitra , Biswajit Basu

In this paper we study the Steiner tree problem over a dynamic set of terminals. We consider the model where we are given an $n$-vertex graph $G=(V,E,w)$ with positive real edge weights, and our goal is to maintain a tree which is a good…

Data Structures and Algorithms · Computer Science 2016-06-27 Jakub Łącki , Jakub Oćwieja , Marcin Pilipczuk , Piotr Sankowski , Anna Zych

Real-world networks are prone to breakdowns. Typically in the underlying graph $G$, besides the insertion or deletion of edges, the set of active vertices changes overtime. A vertex might work actively, or it might fail, and gets isolated…

Data Structures and Algorithms · Computer Science 2017-03-01 Ran Duan , Le Zhang

Edge connectivity and vertex connectivity are two fundamental concepts in graph theory. Although by now there is a good understanding of the structure of graphs based on their edge connectivity, our knowledge in the case of vertex…

Discrete Mathematics · Computer Science 2013-04-17 Keren Censor-Hillel , Mohsen Ghaffari , Fabian Kuhn

The rise of the Internet of Things and edge computing has shifted computing resources closer to end-users, benefiting numerous delay-sensitive, computation-intensive applications. To speed up computation, distributed computing is a…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-10-10 Ke Ma , Junfei Xie

We consider the problem of self-healing in networks that are reconfigurable in the sense that they can change their topology during an attack. Our goal is to maintain connectivity in these networks, even in the presence of repeated…

Data Structures and Algorithms · Computer Science 2016-11-17 Jared Saia , Amitabh Trehan

In a variety of applications, we need to keep track of the development of a data set over time. For maintaining and querying this multi version data I/O-efficiently, external memory data structures are required. In this paper, we present a…

General Literature · Computer Science 2007-05-23 Saju Jude Dominic , G. Sajith

The complexity of the maximum common connected subgraph problem in partial $k$-trees is still not fully understood. Polynomial-time solutions are known for degree-bounded outerplanar graphs, a subclass of the partial $2$-trees. On the other…

Data Structures and Algorithms · Computer Science 2017-08-10 Nils Kriege , Florian Kurpicz , Petra Mutzel

The comprehensive characterization of the structure of complex networks is essential to understand the dynamical processes which guide their evolution. The discovery of the scale-free distribution and the small world property of real…

Computational Physics · Physics 2009-11-13 Paulino R. Villas Boas , Francisco A. Rodrigues , Gonzalo Travieso , Luciano da F. Costa

Spanning trees of low average stretch on the non-tree edges, as introduced by Alon et al. [SICOMP 1995], are a natural graph-theoretic object. In recent years, they have found significant applications in solvers for symmetric diagonally…

Data Structures and Algorithms · Computer Science 2019-08-01 Sebastian Forster , Gramoz Goranci

Large tree structures are ubiquitous and real-world relational datasets often have information associated with nodes (e.g., labels or other attributes) and edges (e.g., weights or distances) that need to be communicated to the viewers. Yet,…

Computational Geometry · Computer Science 2023-05-18 Kathryn Gray , Mingwei Li , Reyan Ahmed , Md. Khaledur Rahman , Ariful Azad , Stephen Kobourov , Katy Börner

Motivated by an application in computational topology, we consider a novel variant of the problem of efficiently maintaining dynamic rooted trees. This variant requires merging two paths in a single operation. In contrast to the standard…

Data Structures and Algorithms · Computer Science 2007-11-13 Loukas Georgiadis , Haim Kaplan , Nira Shafrir , Robert E. Tarjan , Renato F. Werneck

A graph is componentwise biconnected if every connected component either is an isolated vertex or is biconnected. We present a linear-time algorithm for the problem of adding the smallest number of edges to make a bipartite graph…

Data Structures and Algorithms · Computer Science 2007-05-23 Tsan-sheng Hsu , Ming-Yang Kao

We study the problem of finding and monitoring fixed-size subgraphs in a continually changing large-scale graph. We present the first approach that (i) performs worst-case optimal computation and communication, (ii) maintains a total memory…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-02-13 Khaled Ammar , Frank McSherry , Semih Salihoglu , Manas Joglekar

Knowledge Graphs are pivotal for semantic data integration. The real-world data they model is often inherently uncertain. Within knowledge graphs, uncertainty manifests in three distinct levels: imprecise attribute values, probabilistic…

Artificial Intelligence · Computer Science 2026-05-19 Jingcheng Wu

We show an algorithm for dynamic maintenance of connectivity information in an undirected planar graph subject to edge deletions. Our algorithm may answer connectivity queries of the form `Are vertices $u$ and $v$ connected with a path?' in…

Data Structures and Algorithms · Computer Science 2014-09-26 Jakub Łącki , Piotr Sankowski

Depth first search (DFS) tree is one of the most well-known data structures for designing efficient graph algorithms. Given an undirected graph $G=(V,E)$ with $n$ vertices and $m$ edges, the textbook algorithm takes $O(n+m)$ time to…

Data Structures and Algorithms · Computer Science 2018-02-21 Lijie Chen , Ran Duan , Ruosong Wang , Hanrui Zhang , Tianyi Zhang

We study the problem of maintaining robust and sparse overlay networks in fully distributed settings where nodes continuously join and leave the system. This scenario closely models real-world unstructured peer-to-peer networks, where…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-09-16 Antonio Cruciani

The Steiner tree problem aims to determine a minimum edge-weighted tree that spans a given set of terminal vertices from a given graph. In the past decade, a considerable number of algorithms have been developed to solve this…

Data Structures and Algorithms · Computer Science 2024-08-23 Ming Sun , Xinyu Wu , Yi Zhou , Jin-Kao Hao , Zhang-Hua Fu
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