Related papers: Finding and Counting Patterns in Sparse Graphs
Treedepth, a more restrictive graph width parameter than treewidth and pathwidth, plays a major role in the theory of sparse graph classes. We show that there exists a constant $C$ such that for every positive integers $a,b$ and a graph…
Sparse coding algorithms are about finding a linear basis in which signals can be represented by a small number of active (non-zero) coefficients. Such coding has many applications in science and engineering and is believed to play an…
We study homomorphism polynomials, which are polynomials that enumerate all homomorphisms from a pattern graph $H$ to $n$-vertex graphs. These polynomials have received a lot of attention recently for their crucial role in several new…
Temporal graphs provide a useful model for many real-world networks. Unfortunately the majority of algorithmic problems we might consider on such graphs are intractable. There has been recent progress in defining structural parameters which…
Subgraph matching is a compute-intensive problem that asks to enumerate all the isomorphic embeddings of a query graph within a data graph. This problem is generally solved with backtracking, which recursively evolves every possible partial…
We present new algorithms for the problem of multiple string matching of gapped patterns, where a gapped pattern is a sequence of strings such that there is a gap of fixed length between each two consecutive strings. The problem has…
Structured sparse optimization is an important and challenging problem for analyzing high-dimensional data in a variety of applications such as bioinformatics, medical imaging, social networks, and astronomy. Although a number of structured…
Parameterized complexity seeks to use input structure to obtain faster algorithms for NP-hard problems. This has been most successful for graphs of low treewidth: Many problems admit fast algorithms relative to treewidth and many of them…
The computation of distance measures between nodes in graphs is inefficient and does not scale to large graphs. We explore dense vector representations as an effective way to approximate the same information: we introduce a simple yet…
Statistical analysis of large and sparse graphs is a challenging problem in data science due to the high dimensionality and nonlinearity of the problem. This paper presents a fast and scalable algorithm for partitioning such graphs into…
The tree-depth is a parameter introduced under several names as a measure of sparsity of a graph. We compute asymptotic values of the tree-depth of random graphs. For dense graphs, p>> 1/n, the tree-depth of a random graph G is a.a.s.…
Twin-width is a structural width parameter introduced by Bonnet, Kim, Thomass\'e and Watrigant [FOCS 2020]. Very briefly, its essence is a gradual reduction (a contraction sequence) of the given graph down to a single vertex while…
Network motif algorithms have been a topic of research mainly after the 2002-seminal paper from Milo \emph{et al}, that provided motifs as a way to uncover the basic building blocks of most networks. In Bioinformatics, motifs have been…
Treewidth is a graph parameter of fundamental importance to algorithmic and structural graph theory. This paper surveys several graph parameters tied to treewidth, including separation number, tangle number, well-linked number and Cartesian…
Graphlet counting is an important problem as it has numerous applications in several fields, including social network analysis, biological network analysis, transaction network analysis, etc. Most of the practical networks are dynamic. A…
We consider the fundamental problem of detecting/counting copies of a fixed pattern graph in a host graph. The recent progress on this problem has not included complete pattern graphs, i.e., cliques (and their complements, i.e., edge-free…
We show that for a number of parameterized problems for which only $2^{O(k)} n^{O(1)}$ time algorithms are known on general graphs, subexponential parameterized algorithms with running time $2^{O(k^{1-\frac{1}{1+\delta}} \log^2 k)}…
Computing subgraph frequencies is a fundamental task that lies at the core of several network analysis methodologies, such as network motifs and graphlet-based metrics, which have been widely used to categorize and compare networks from…
A hypergraph is a generalization of a graph, in which a hyperedge can connect multiple vertices, modeling complex relationships involving multiple vertices simultaneously. Hypergraph pattern matching, which is to find all isomorphic…
A large number of NP-hard graph problems can be solved in $f(w)n^{O(1)}$ time and space when the input graph is provided together with a tree decomposition of width $w$, in many cases with a modest exponential dependence $f(w)$ on $w$.…