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Atomic force microscopy (AFM) is a mechanical profiling technique that allows to image surfaces with atomic resolution. Recent progress in reducing the noise of this technique has led to a resolution level where previously undetectable…

Materials Science · Physics 2015-06-24 F. J. Giessibl , H. Bielefeldt , S. Hembacher , J. Mannhart

The shape of a molecule determines its physicochemical and biological properties. However, it is often underrepresented in standard molecular representation learning approaches. Here, we propose using the Euler Characteristic Transform…

Machine Learning · Computer Science 2025-07-08 Victor Toscano-Duran , Florian Rottach , Bastian Rieck

Molecular fingerprinting methods use hash functions to create fixed-length vector representations of molecules. However, hash collisions cause distinct substructures to be represented with the same feature, leading to overestimates in…

Machine Learning · Computer Science 2025-11-24 Walter Virany , Austin Tripp

Predicting absorption, distribution, metabolism, excretion, and toxicity (ADMET) properties remains a critical bottleneck in drug discovery. While molecular fingerprints effectively capture local structural features, they struggle to…

Quantum Physics · Physics 2026-03-04 B. Maurice Benson , Kendall Byler , Anna Petroff , Shahar Keinan , William J Shipman

Physically unclonable functions (PUFs) provide data that can be used for cryptographic purposes: on the one hand randomness for the initialization of random-number generators; on the other hand individual fingerprints for unique…

Cryptography and Security · Computer Science 2015-07-31 Pol Van Aubel , Daniel J. Bernstein , Ruben Niederhagen

We introduce a new fingerprint that allows distinguishing between liquid-like and solid-like atomic environments. This fingerprint is based on an approximate expression for the entropy projected on individual atoms. When combined with a…

Materials Science · Physics 2020-04-10 Pablo M. Piaggi , Michele Parrinello

Although RF fingerprinting is one of the most commonly used techniques for localization, deploying it in a ubiquitous manner requires addressing the challenge of supporting a large number of heterogeneous devices and their variations. We…

Quantum Physics · Physics 2022-07-05 Ahmed Shokry , Moustafa Youssef

Machine-learning models in chemistry - when based on descriptors of atoms embedded within molecules - face essential challenges in transferring the quality of predictions of local electronic structures and their associated properties across…

Chemical Physics · Physics 2024-09-27 Frederik Ø. Kjeldal , Janus J. Eriksen

Human fingerprints serve as one unique and powerful characteristic for each person, from which policemen can recognize the identity. Similar to humans, many natural bodies and intrinsic mechanical qualities can also be uniquely identified…

Machine Learning · Computer Science 2024-03-25 Yongchao Chen

Molecular mechanics (MM) potentials have long been a workhorse of computational chemistry. Leveraging accuracy and speed, these functional forms find use in a wide variety of applications in biomolecular modeling and drug discovery, from…

Magnetic Resonance Fingerprinting (MRF) is an emerging technology with the potential to revolutionize radiology and medical diagnostics. In comparison to traditional magnetic resonance imaging (MRI), MRF enables the rapid, simultaneous,…

Molecules have various computational representations, including numerical descriptors, strings, graphs, point clouds, and surfaces. Each representation method enables the application of various machine learning methodologies from linear…

Machine Learning · Computer Science 2025-02-18 Jirka Lhotka , Daniel Probst

To avoid detection, adversaries often use command-line obfuscation. There are numerous techniques of the command-line obfuscation, all designed to alter the command-line syntax without affecting its original functionality. This variability…

Cryptography and Security · Computer Science 2024-08-06 Vojtech Outrata , Michael Adam Polak , Martin Kopp

Atomic Force Microscopy (AFM) allows to reconstruct the topography of surface with a resolution in the nanometer range. The exceptional resolution attainable with the AFM makes this instrument a key tool in nanoscience and technology. The…

Predicting the properties of a molecule from its structure is a challenging task. Recently, deep learning methods have improved the state of the art for this task because of their ability to learn useful features from the given data. By…

Machine Learning · Computer Science 2020-08-28 Shengli Jiang , Prasanna Balaprakash

Few-shot learning is a promising approach to molecular property prediction as supervised data is often very limited. However, many important molecular properties depend on complex molecular characteristics -- such as the various 3D…

Machine Learning · Computer Science 2023-10-10 Christopher Fifty , Joseph M. Paggi , Ehsan Amid , Jure Leskovec , Ron Dror

The task of privacy-preserving face recognition (PPFR) currently faces two major unsolved challenges: (1) existing methods are typically effective only on specific face recognition models and struggle to generalize to black-box face…

Computer Vision and Pattern Recognition · Computer Science 2024-12-12 Yuanwei Liu , Chengyu Jia , Ruqi Xiao , Xuemai Jia , Hui Wei , Kui Jiang , Zheng Wang

We present a quantum fingerprinting protocol relying on two-photon interference which does not require a shared phase reference between the parties preparing optical signals carrying data fingerprints. We show that the scaling of the…

Quantum Physics · Physics 2018-02-20 Michał Jachura , Michał Lipka , Marcin Jarzyna , Konrad Banaszek

Molecular property prediction is essential in a variety of contemporary scientific fields, such as drug development and designing energy storage materials. Although there are many machine learning models available for this purpose, those…

Machine Learning · Computer Science 2025-06-03 Gihan Panapitiya , Peiyuan Gao , C Mark Maupin , Emily G Saldanha

Recently, persistent homology has had tremendous success in biomolecular data analysis. It works by examining the topological relationship or connectivity of a group of atoms in a molecule at a variety of scales, then rendering a family of…

Biomolecules · Quantitative Biology 2019-03-27 David Bramer , Guo-Wei Wei
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