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The architecture of eukaryotic coding genes allows the production of several different protein isoforms by genes. Current gene phylogeny reconstruction methods make use of a single protein product per gene, ignoring information on…

Data Structures and Algorithms · Computer Science 2017-07-05 Esaie Kuitche , Manuel Lafond , Aïda Ouangraoua

Low bit-width weights and activations are an effective way of combating the increasing need for both memory and compute power of Deep Neural Networks. In this work, we present a probabilistic training method for Neural Network with both…

Machine Learning · Computer Science 2018-09-11 Jorn W. T. Peters , Max Welling

Tabular datasets play a crucial role in various applications. Thus, developing efficient, effective, and widely compatible prediction algorithms for tabular data is important. Currently, two prominent model types, Gradient Boosted Decision…

Machine Learning · Computer Science 2024-07-16 Jiahuan Yan , Jintai Chen , Qianxing Wang , Danny Z. Chen , Jian Wu

Alphabetic codes and binary search trees are combinatorial structures that abstract search procedures in ordered sets endowed with probability distributions. In this paper, we design new linear-time algorithms to construct alphabetic codes,…

Information Theory · Computer Science 2024-07-24 Roberto Bruno , Roberto De Prisco , Alfredo De Santis , Ugo Vaccaro

Binary Neural Networks (BNNs), which constrain both weights and activations to binary values, offer substantial reductions in computational complexity, memory footprint, and energy consumption. These advantages make them particularly well…

Machine Learning · Computer Science 2026-02-18 Luca Colombo , Fabrizio Pittorino , Daniele Zambon , Carlo Baldassi , Manuel Roveri , Cesare Alippi

We looked into the algorithm for calculating Betti numbers presented by Lloyd, Garnerone, and Zanardi (LGZ). We present a new algorithm in the same spirit as LGZ with the intent of clarifying quantum algorithms for computing Betti numbers.…

Quantum Physics · Physics 2019-09-26 Sam Gunn , Niels Kornerup

We develop fast approximation algorithms for the minimum-cost version of the Bounded-Degree MST problem (BD-MST) and its generalization the Crossing Spanning Tree problem (Crossing-ST). We solve the underlying LP to within a $(1+\epsilon)$…

Data Structures and Algorithms · Computer Science 2021-05-19 Chandra Chekuri , Kent Quanrud , Manuel R. Torres

We show a new simple algorithm that solves the model-checking problem for recursion schemes: check whether the tree generated by a given higher-order recursion scheme is accepted by a given alternating parity automaton. The algorithm…

Logic in Computer Science · Computer Science 2021-05-06 Paweł Parys

A set of orthogonal polynomials on the unit disk $B(0,1)$ known as Zernike polynomials are commonly used in the analysis and evaluation of optical systems. Here Zernike polynomials are used to construct wavelets for polynomial subspaces of…

Functional Analysis · Mathematics 2025-07-24 Somantika Datta , Kanti B. Datta

In this paper, we present Batch Informed Trees (BIT*), a planning algorithm based on unifying graph- and sampling-based planning techniques. By recognizing that a set of samples describes an implicit random geometric graph (RGG), we are…

Robotics · Computer Science 2015-08-14 Jonathan D. Gammell , Siddhartha S. Srinivasa , Timothy D. Barfoot

Probabilistic sampling methods have become very popular to solve single-shot path planning problems. Rapidly-exploring Random Trees (RRTs) in particular have been shown to be efficient in solving high dimensional problems. Even though…

Artificial Intelligence · Computer Science 2009-12-02 Nicolas A. Barriga , Mauricio Araya-López

There are several data structures which can calculate the prefix sums of an array efficiently, while handling point updates on the array, such as Segment Trees and Binary Indexed Trees (BIT). Both these data structures can handle the these…

Data Structures and Algorithms · Computer Science 2016-12-30 Anubhav Baweja

Model-Based Iterative Reconstruction (MBIR) is important because direct methods, such as Filtered Back-Projection (FBP) can introduce significant noise and artifacts in sparse-angle tomography, especially for time-evolving samples. Although…

Mathematical Software · Computer Science 2026-03-31 Dinesh Kumar , Jeffrey Donatelli

The automation of ab initio simulations is essential in view of performing high-throughput (HT) computational screenings oriented to the discovery of novel materials with desired physical properties. In this work, we propose algorithms and…

We initiate the study of tree structures in the context of scenario-based robust optimization. Specifically, we study Binary Search Trees (BSTs) and Huffman coding, two fundamental techniques for efficiently managing and encoding data based…

Data Structures and Algorithms · Computer Science 2024-08-22 Spyros Angelopoulos , Christoph Dürr , Alex Elenter , Georgii Melidi

This work formalizes efficient Fast Fourier-based multiplication algorithms for polynomials in quotient rings such as $\mathbb{Z}_{m}[x]/\left<x^{n}-a\right>$, with $n$ a power of 2 and $m$ a non necessarily prime integer. We also present a…

Discrete Mathematics · Computer Science 2023-04-19 Ramiro Martínez , Paz Morillo

Numeric modeling of electromagnetics and acoustics frequently entails matrix-vector multiplication with block Toeplitz structure. When the corresponding block Toeplitz matrix is not highly sparse, e.g. when considering the electromagnetic…

Numerical Analysis · Mathematics 2024-06-27 Alexandre Siron , Sean Molesky

Multidimensional population balance models (PBMs) describe chemical and biological processes having a distribution over two or more intrinsic properties (such as size and age, or two independent spatial variables). The incorporation of…

Computational Engineering, Finance, and Science · Computer Science 2025-04-29 Pavan Inguva , Richard D. Braatz

Motion planning problems have been studied by both the robotics and the controls research communities for a long time, and many algorithms have been developed for their solution. Among them, incremental sampling-based motion planning…

Robotics · Computer Science 2012-05-01 Oktay Arslan , Panagiotis Tsiotras

Binary segmentation is the classic greedy algorithm which recursively splits a sequential data set by optimizing some loss or likelihood function. Binary segmentation is widely used for changepoint detection in data sets measured over space…

Machine Learning · Computer Science 2024-10-14 Toby Dylan Hocking