Related papers: Fast M\"obius and Zeta Transforms

We consider the approximate pattern matching problem under the edit distance. Given a text $T$ of length $n$, a pattern $P$ of length $m$, and a threshold $k$, the task is to find the starting positions of all substrings of $T$ that can be…

In this paper, we present a novel and efficient algorithm to find the k longest (shortest) paths between sources and sinks in a directed acyclic graph (DAG). The algorithm does not enumerate paths therefore it is especially useful for very…

Given an arbitrary, non-negatively weighted, directed graph $G=(V,E)$ we present an algorithm that computes all pairs shortest paths in time $\mathcal{O}(m^* n + m \lg n + nT_\psi(m^*, n))$, where $m^*$ is the number of different edges…

Given a directed graph $G$, a transitive reduction $G^t$ of $G$ (first studied by Aho, Garey, Ullman [SICOMP `72]) is a minimal subgraph of $G$ that preserves the reachability relation between every two vertices in $G$. In this paper, we…

We study the 2-Disjoint Shortest Paths (2-DSP) problem: given a directed weighted graph and two terminal pairs $(s_1,t_1)$ and $(s_2,t_2)$, decide whether there exist vertex-disjoint shortest paths between each pair. Building on recent…

The minimum degree algorithm is one of the most widely-used heuristics for reducing the cost of solving large sparse systems of linear equations. It has been studied for nearly half a century and has a rich history of bridging techniques…

In the restricted shortest paths problem, we are given a graph $G$ whose edges are assigned two non-negative weights: lengths and delays, a source $s$, and a delay threshold $D$. The goal is to find, for each target $t$, the length of the…

Exact Bayesian structure discovery in Bayesian networks requires exponential time and space. Using dynamic programming (DP), the fastest known sequential algorithm computes the exact posterior probabilities of structural features in…

The problem of learning a directed acyclic graph (DAG) up to Markov equivalence is equivalent to the problem of finding a permutation of the variables that induces the sparsest graph. Without additional assumptions, this task is known to be…

In this paper we associate with every (directed) graph G a transformation called the Mobius transformation of the graph G. The Mobius transformation of the graph (O) is of major significance for Dempster-Shafer theory of evidence. However,…

Given a directed graph of nodes and edges connecting them, a common problem is to find the shortest path between any two nodes. Here we show that the shortest path distances can be found by a simple matrix inversion: If the edges are given…

We consider a generalized poset sorting problem (GPS), in which we are given a query graph $G = (V, E)$ and an unknown poset $\mathcal{P}(V, \prec)$ that is defined on the same vertex set $V$, and the goal is to make as few queries as…

We present a family of fast pseudo-approximation algorithms for the minimum balanced vertex separator problem in a graph. Given a graph $G=(V,E)$ with $n$ vertices and $m$ edges, and a (constant) balance parameter $c\in(0,1/2)$, where $G$…

A fast implementation of the OPED algorithm, a reconstruction algorithm for Radon data introduced recently, is proposed and tested. The new implementation uses FFT for discrete sine transform and an interpolation step. The convergence of…

A minimum path cover (MPC) of a directed acyclic graph (DAG) $G = (V,E)$ is a minimum-size set of paths that together cover all the vertices of the DAG. Computing an MPC is a basic polynomial problem, dating back to Dilworth's and…

Partially ordered sets (posets) are fundamental combinatorial objects with important applications in computer science. Perhaps the most natural algorithmic task, given a size-$n$ poset, is to compute its number of linear extensions. In 1991…

Retraction note: After posting the manuscript on arXiv, we were informed by Erik Jan van Leeuwen that both results were known and they appeared in his thesis[vL09]. A PTAS for MDS is at Theorem 6.3.21 on page 79 and A PTAS for MCDS is at…

Let $M=(m_{ij})$ be a symmetric matrix of order $n$ whose elements lie in an arbitrary field $\mathbb{F}$, and let $G$ be the graph with vertex set $\{1,\ldots,n\}$ such that distinct vertices $i$ and $j$ are adjacent if and only if $m_{ij}…

Computing the winning set for B{\"u}chi objectives in alternating games on graphs is a central problem in computer aided verification with a large number of applications. The long standing best known upper bound for solving the problem is…

We present an efficient algorithm for finding all approximate occurrences of a given pattern $p$ of length $m$ in a text $t$ of length $n$ allowing for translocations of equal length adjacent factors and inversions of factors. The algorithm…