Related papers: Fast M\"obius and Zeta Transforms
We revisit the problem of permuting an array of length $n$ according to a given permutation in place, that is, using only a small number of bits of extra storage. Fich, Munro and Poblete [FOCS 1990, SICOMP 1995] obtained an elegant…
Many common graph data mining tasks take the form of identifying dense subgraphs (e.g. clustering, clique-finding, etc). In biological applications, the natural model for these dense substructures is often a complete bipartite graph…
We present a fast algorithm for the subset convolution problem: given functions f and g defined on the lattice of subsets of an n-element set N, compute their subset convolution f*g, defined for all S\subseteq N by (f * g)(S) = \sum_{T…
In the classic Minimum Bisection problem we are given as input a graph $G$ and an integer $k$. The task is to determine whether there is a partition of $V(G)$ into two parts $A$ and $B$ such that $||A|-|B|| \leq 1$ and there are at most $k$…
We obtain two new algorithms for partial fraction decompositions; the first is over algebraically closed fields, and the second is over general fields. These algorithms takes $O(M^2)$ time, where $M$ is the degree of the denominator of the…
We present the Fast Newton Transform (FNT), an algorithm for performing $m$-variate Newton interpolation in downward closed polynomial spaces with time complexity $\mathcal{O}(|A|m\overline{n})$. Here, $A$ is a downward closed set of…
Various applications such as MRI, solution of PDEs, etc. need to perform an inverse nonequispaced fast Fourier transform (NFFT), i. e., compute $M$ Fourier coefficients from given $N$ nonequispaced data. In the present paper we consider…
We present an $\tilde O(m+n^{1.5})$-time randomized algorithm for maximum cardinality bipartite matching and related problems (e.g. transshipment, negative-weight shortest paths, and optimal transport) on $m$-edge, $n$-node graphs. For…
Suppose a graph $G$ is stochastically created by uniformly sampling vertices along a line segment and connecting each pair of vertices with a probability that is a known decreasing function of their distance. We ask if it is possible to…
In this paper we describe an algorithm that embeds a graph metric $(V,d_G)$ on an undirected weighted graph $G=(V,E)$ into a distribution of tree metrics $(T,D_T)$ such that for every pair $u,v\in V$, $d_G(u,v)\leq d_T(u,v)$ and…
We study dynamic $(1+\epsilon)$-approximation algorithms for the all-pairs shortest paths problem in unweighted undirected $n$-node $m$-edge graphs under edge deletions. The fastest algorithm for this problem is a randomized algorithm with…
We consider the problem of exactly learning an $s$-sparse real-valued Boolean polynomial of degree $d$ of the form $f:\{ 0,1\}^n \rightarrow \mathbb{R}$. This problem corresponds to decomposing functions in the AND basis and is known as…
We develop simple and general techniques to obtain faster (near-linear time) static approximation algorithms, as well as efficient dynamic data structures, for four fundamental geometric optimization problems: minimum piercing set (MPS),…
Reducing the running time of graph algorithms is vital for tackling real-world problems such as shortest paths and matching in large-scale graphs, where path information plays a crucial role. To address this critical challenge, this paper…
We show that every directed graph $G$ with $n$ vertices and $m$ edges admits a directed acyclic graph (DAG) with $m^{1+o(1)}$ edges, called a DAG projection, that can either $(1+1/\text{polylog} (n))$-approximate distances between all pairs…
A "genome structure" is a labeled directed graph with vertices of degree 1 or 2. A set of operations over such graphs is fixed, and each of the operations has a certain cost, a strictly positive number. The transformation problem consists…
We present two algorithms for maintaining the topological order of a directed acyclic graph with n vertices, under an online edge insertion sequence of m edges. Efficient algorithms for online topological ordering have many applications,…
We give an algorithm that reduces the straight skeleton to the motorcycle graph in $O(n\log n)$ time for simple polygons and $O(n(\log n)\log m)$ time for a planar straight line graph (PSLG) with $m$ connected components. This improves on…
The width $k$ of a directed acyclic graph (DAG) $G = (V, E)$ equals the largest number of pairwise non-reachable vertices. Computing the width dates back to Dilworth's and Fulkerson's results in the 1950s, and is doable in quadratic time in…
Identifying dense bipartite subgraphs is a common graph data mining task. Many applications focus on the enumeration of all maximal bicliques (MBs), though sometimes the stricter variant of maximal induced bicliques (MIBs) is of interest.…