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Phylogenetic trees and networks are leaf-labelled graphs used to model evolution. Display graphs are created by identifying common leaf labels in two or more phylogenetic trees or networks. The treewidth of such graphs is bounded as a…

Data Structures and Algorithms · Computer Science 2018-09-05 Remie Janssen , Mark Jones , Steven Kelk , Georgios Stamoulis , Taoyang Wu

Recent results show that the structural similarity of graphs can be characterized by counting homomorphisms to them: the Tree Theorem states that the well-known color-refinement algorithm does not distinguish two graphs G and H if and only…

Discrete Mathematics · Computer Science 2019-04-01 Jan Böker

A graph $G$ is said to be chordal if it has no induced cycles of length four or more. In a recent preprint Culbertson, Guralnik, and Stiller give a new characterization of chordal graphs in terms of sequences of what they call…

Combinatorics · Mathematics 2021-02-25 Anton Dochtermann

Node similarity is a fundamental problem in graph analytics. However, node similarity between nodes in different graphs (inter-graph nodes) has not received a lot of attention yet. The inter-graph node similarity is important in learning a…

Databases · Computer Science 2016-02-17 Haohan Zhu , Xianrui Meng , George Kollios

The celebrated Erd\H{o}s-P\'{o}sa Theorem, in one formulation, asserts that for every $c\geq 1$, graphs with no subgraph (or equivalently, minor) isomorphic to the disjoint union of $c$ cycles have bounded treewidth. What can we say about…

Combinatorics · Mathematics 2025-03-10 Bogdan Alecu , Maria Chudnovsky , Sepehr Hajebi , Sophie Spirkl

A contraction sequence of a graph consists of iteratively merging two of its vertices until only one vertex remains. The recently introduced twin-width graph invariant is based on contraction sequences. More precisely, if one puts red edges…

Data Structures and Algorithms · Computer Science 2022-06-02 Édouard Bonnet , Eun Jung Kim , Amadeus Reinald , Stéphan Thomassé

Let $T$ be a tree with $t$ edges. We show that the number of isomorphic (labeled) copies of $T$ in a graph $G = (V,E)$ of minimum degree at least $t$ is at least \[2|E| \prod_{v \in V} (d(v) - t + 1)^{\frac{(t-1)d(v)}{2|E|}}.\]…

Combinatorics · Mathematics 2015-11-24 Dhruv Mubayi , Jacques Verstraete

This paper deals with graph classes characterization and recognition. A popular way to characterize a graph class is to list a minimal set of forbidden induced subgraphs. Unfortunately this strategy usually does not lead to an efficient…

Data Structures and Algorithms · Computer Science 2020-07-21 Laurent Feuilloley , Michel Habib

A graph class is monotone if it is closed under taking subgraphs. It is known that a monotone class defined by finitely many obstructions has bounded treewidth if and only if one of the obstructions is a so-called tripod, that is, a…

The leafage l(G) of a chordal graph G is the minimum number of leaves of a tree in which G has an intersection representation by subtrees. We obtain upper and lower bounds on l(G) and compute it on special classes. The maximum of l(G) on…

Combinatorics · Mathematics 2007-05-23 In-Jen Lin , Terry A. McKee , Douglas B. West

We present a concept called the branch-depth of a connectivity function, that generalizes the tree-depth of graphs. Then we prove two theorems showing that this concept aligns closely with the notions of tree-depth and shrub-depth of graphs…

Combinatorics · Mathematics 2020-11-05 Matt DeVos , O-joung Kwon , Sang-il Oum

Graph neural networks are prominent models for representation learning over graphs, where the idea is to iteratively compute representations of nodes of an input graph through a series of transformations in such a way that the learned graph…

Machine Learning · Computer Science 2023-10-26 Radoslav Dimitrov , Zeyang Zhao , Ralph Abboud , İsmail İlkan Ceylan

We determine if the width of a graph class ${\cal G}$ changes from unbounded to bounded if we consider only those graphs from ${\cal G}$ whose diameter is bounded. As parameters we consider treedepth, pathwidth, treewidth and clique-width,…

Discrete Mathematics · Computer Science 2025-05-27 Konrad K. Dabrowski , Tala Eagling-Vose , Noleen Köhler , Sebastian Ordyniak , Daniël Paulusma

As a higher analogue of the edge ideal of a graph, we study the $t$-connected ideal $\operatorname{J}_{t}$. This is the monomial ideal generated by the connected subsets of size $t$. For chordal graphs, we show that $\operatorname{J}_{t}$…

Commutative Algebra · Mathematics 2025-04-02 H. Ananthnarayan , Omkar Javadekar , Aryaman Maithani

We introduce a new model of indeterminacy in graphs: instead of specifying all the edges of the graph, the input contains all triples of vertices that form a connected subgraph. In general, different (labelled) graphs may have the same set…

Discrete Mathematics · Computer Science 2023-03-14 Paul Bastide , Linda Cook , Jeff Erickson , Carla Groenland , Marc van Kreveld , Isja Mannens , Jordi L. Vermeulen

The tree-independence number tree-$\alpha$, first defined and studied by Dallard, Milani\v{c} and \v{S}torgel, is a variant of treewidth tailored to solving the maximum independent set problem. Over a series of papers, Abrishami et al.…

Probabilistic graphical models offer a powerful framework to account for the dependence structure between variables, which is represented as a graph. However, the dependence between variables may render inference tasks intractable. In this…

The main focus of this thesis is a generalization of covering arrays, covering arrays on graphs. Two vectors v,w in Z_k^n are qualitatively independent if for all ordered pairs (a,b) in Z_k x Z_k there is a position i in the vectors where…

Combinatorics · Mathematics 2007-05-23 Karen Meagher

A proper coloring $\phi$ of $G$ is called a proper conflict-free coloring of $G$ if for every non-isolated vertex $v$ of $G$, there is a color $c$ such that $|\phi^{-1}(c)\cap N_G(v)|=1$. As an analogy of degree-choosability of graphs, we…

Combinatorics · Mathematics 2025-09-22 Masaki Kashima , Riste Škrekovski , Rongxing Xu

Let $H=(V,F)$ be a simple hypergraph without loops. $H$ is called linear if $|f\cap g|\le 1$ for any $f,g\in F$ with $f\not=g$. The $2$-section of $H$, denoted by $[H]_2$, is a graph with $V([H]_2)=V$ and for any $ u,v\in V([H]_2)$, $uv\in…

Combinatorics · Mathematics 2023-06-22 Ke Liu , Mei Lu
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