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The problem of answering questions using knowledge from pre-trained language models (LMs) and knowledge graphs (KGs) presents two challenges: given a QA context (question and answer choice), methods need to (i) identify relevant knowledge…

Computation and Language · Computer Science 2022-12-14 Michihiro Yasunaga , Hongyu Ren , Antoine Bosselut , Percy Liang , Jure Leskovec

Real-world multimodal knowledge graphs (MKGs) are inherently heterogeneous, modeling entities that are associated with diverse modalities. Traditional knowledge graph embedding (KGE) methods excel at learning continuous representations of…

Artificial Intelligence · Computer Science 2026-03-16 Athanasios Efthymiou , Stevan Rudinac , Monika Kackovic , Nachoem Wijnberg , Marcel Worring

Accurate identification of disease genes has consistently been one of the keys to decoding a disease's molecular mechanism. Most current approaches focus on constructing biological networks and utilizing machine learning, especially, deep…

Artificial Intelligence · Computer Science 2023-03-17 Xinyan Wang , Ting Jia , Chongyu Wang , Kuan Xu , Zixin Shu , Jian Yu , Kuo Yang , Xuezhong Zhou

Open Knowledge Graphs (such as DBpedia, Wikidata, YAGO) have been recognized as the backbone of diverse applications in the field of data mining and information retrieval. Hence, the completeness and correctness of the Knowledge Graphs…

Computation and Language · Computer Science 2020-05-07 Russa Biswas , Radina Sofronova , Mehwish Alam , Harald Sack

Knowledge Graphs (KG) act as a great tool for holding distilled information from large natural language text corpora. The problem of natural language querying over knowledge graphs is essential for the human consumption of this information.…

Machine Learning · Computer Science 2021-12-22 Aayushee Gupta , K. M. Annervaz , Ambedkar Dukkipati , Shubhashis Sengupta

Biomedical knowledge graphs (KGs) are widely used in the life sciences, yet many are derived from unstructured documents and therefore lack schema-level constrains, whereas graphs assembled from structured resources are difficult to…

Artificial Intelligence · Computer Science 2026-05-01 Lucas Vittor , Ayush Noori , Iñaki Arango , Joaquín Polonuer , Sam Rodriques , Andrew White , David A. Clifton , Marinka Zitnik

Entity linking - connecting entity mentions in a natural language utterance to knowledge graph (KG) entities is a crucial step for question answering over KGs. It is often based on measuring the string similarity between the entity label…

Computation and Language · Computer Science 2020-02-27 Rostislav Nedelchev , Debanjan Chaudhuri , Jens Lehmann , Asja Fischer

Knowledge graph (KG) entity typing aims at inferring possible missing entity type instances in KG, which is a very significant but still under-explored subtask of knowledge graph completion. In this paper, we propose a novel approach for KG…

Computation and Language · Computer Science 2020-07-22 Yu Zhao , Anxiang Zhang , Ruobing Xie , Kang Liu , Xiaojie Wang

Representation Learning of words and Knowledge Graphs (KG) into low dimensional vector spaces along with its applications to many real-world scenarios have recently gained momentum. In order to make use of multiple KG embeddings for…

Computation and Language · Computer Science 2020-04-16 Russa Biswas , Mehwish Alam , Harald Sack

Large language models (LLMs) are increasingly used in the mental health domain, yet it remains unclear how well they capture related biomedical knowledge and how reliably they apply it to clinically salient structured judgments. Here, we…

Computation and Language · Computer Science 2026-05-18 Weixin Liu , Congning Ni , Shelagh A. Mulvaney , Susannah L. Rose , Murat Kantarcioglu , Bradley A. Malin , Zhijun Yin

In this paper, we present KG20C and KG20C-QA, two curated datasets for advancing question answering (QA) research on scholarly data. KG20C is a high-quality scholarly knowledge graph constructed from the Microsoft Academic Graph through…

Information Retrieval · Computer Science 2026-01-01 Hung-Nghiep Tran , Atsuhiro Takasu

In the realm of computational knowledge representation, Knowledge Graph Reasoning (KG-R) stands at the forefront of facilitating sophisticated inferential capabilities across multifarious domains. The quintessence of this research…

Artificial Intelligence · Computer Science 2024-03-12 Chen Li , Haotian Zheng , Yiping Sun , Cangqing Wang , Liqiang Yu , Che Chang , Xinyu Tian , Bo Liu

The problem of knowledge graph (KG) reasoning has been widely explored by traditional rule-based systems and more recently by knowledge graph embedding methods. While logical rules can capture deterministic behavior in a KG they are brittle…

Artificial Intelligence · Computer Science 2020-09-24 Susheel Suresh , Jennifer Neville

Knowledge Graph Question Answering (KGQA) involves retrieving facts from a Knowledge Graph (KG) using natural language queries. A KG is a curated set of facts consisting of entities linked by relations. Certain facts include also temporal…

Many mathematical models have been leveraged to design embeddings for representing Knowledge Graph (KG) entities and relations for link prediction and many downstream tasks. These mathematically-inspired models are not only highly scalable…

Artificial Intelligence · Computer Science 2023-09-25 Xiou Ge , Yun-Cheng Wang , Bin Wang , C. -C. Jay Kuo

Knowledge graphs (KGs) are important products of the semantic web, which are widely used in various application domains. Healthcare is one of such domains where KGs are intensively used, due to the high requirement for knowledge accuracy…

Artificial Intelligence · Computer Science 2025-07-31 Yuzhang Xie , Xu Han , Ran Xu , Xiao Hu , Jiaying Lu , Carl Yang

The rapid expansion of medical literature presents growing challenges for structuring and integrating domain knowledge at scale. Knowledge Graphs (KGs) offer a promising solution by enabling efficient retrieval, automated reasoning, and…

Computation and Language · Computer Science 2025-08-20 Duzhen Zhang , Zixiao Wang , Zhong-Zhi Li , Yahan Yu , Shuncheng Jia , Jiahua Dong , Haotian Xu , Xing Wu , Yingying Zhang , Tielin Zhang , Jie Yang , Xiuying Chen , Le Song

Knowledge graph embeddings (KGE) apply machine learning methods on knowledge graphs (KGs) to provide non-classical reasoning capabilities based on similarities and analogies. The learned KG embeddings are typically used to answer queries by…

Artificial Intelligence · Computer Science 2025-01-28 Yuqicheng Zhu , Nico Potyka , Jiarong Pan , Bo Xiong , Yunjie He , Evgeny Kharlamov , Steffen Staab

Heterogeneous molecular entities and their interactions, commonly depicted as a network, are crucial for advancing our systems-level understanding of biology. With recent advancements in high-throughput data generation and a significant…

Quantitative Methods · Quantitative Biology 2026-03-18 Kishan KC , Rui Li , Paribesh Regmi , Anne R. Haake

Advancements in natural language processing have revolutionized the way we can interact with digital information systems, such as databases, making them more accessible. However, challenges persist, especially when accuracy is critical, as…

Computation and Language · Computer Science 2025-11-12 Larissa Pusch , Tim O. F. Conrad