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The advent of large language models (LLMs) has revolutionized the integration of knowledge graphs (KGs) in biomedical and cognitive sciences, overcoming limitations in traditional machine learning methods for capturing intricate semantic…

Artificial Intelligence · Computer Science 2025-10-09 Ali Sarabadani , Kheirolah Rahsepar Fard

Multi-hop reasoning over real-life knowledge graphs (KGs) is a highly challenging problem as traditional subgraph matching methods are not capable to deal with noise and missing information. To address this problem, it has been recently…

Artificial Intelligence · Computer Science 2022-07-05 Zhiwei Hu , Víctor Gutiérrez-Basulto , Zhiliang Xiang , Xiaoli Li , Ru Li , Jeff Z. Pan

In recent years, we have witnessed the proliferation of knowledge graphs (KG) in various domains, aiming to support applications like question answering, recommendations, etc. A frequent task when integrating knowledge from different KGs is…

Databases · Computer Science 2023-06-08 Nikolaos Fanourakis , Vasilis Efthymiou , Dimitris Kotzinos , Vassilis Christophides

Answering complex logical queries on incomplete knowledge graphs (KGs) with missing edges is a fundamental and important task for knowledge graph reasoning. The query embedding method is proposed to answer these queries by jointly encoding…

Computation and Language · Computer Science 2022-04-28 Jiaxin Bai , Zihao Wang , Hongming Zhang , Yangqiu Song

Electronic Health Records (EHRs) and routine documentation practices play a vital role in patients' daily care, providing a holistic record of health, diagnoses, and treatment. However, complex and verbose EHR narratives overload healthcare…

Computation and Language · Computer Science 2025-02-26 Yanjun Gao , Ruizhe Li , Emma Croxford , John Caskey , Brian W Patterson , Matthew Churpek , Timothy Miller , Dmitriy Dligach , Majid Afshar

Knowledge graph (KG) is known to be helpful for the task of question answering (QA), since it provides well-structured relational information between entities, and allows one to further infer indirect facts. However, it is challenging to…

Machine Learning · Computer Science 2017-11-29 Yuyu Zhang , Hanjun Dai , Zornitsa Kozareva , Alexander J. Smola , Le Song

Integrating structured knowledge from Knowledge Graphs (KGs) into Large Language Models (LLMs) remains a key challenge for symbolic reasoning. Existing methods mainly rely on prompt engineering or fine-tuning, which lose structural fidelity…

Machine Learning · Computer Science 2025-05-13 Erica Coppolillo

Knowledge Graphs (KGs) have gained considerable attention recently from both academia and industry. In fact, incorporating graph technology and the copious of various graph datasets have led the research community to build sophisticated…

Artificial Intelligence · Computer Science 2020-06-03 Bilal Abu-Salih , Marwan Al-Tawil , Ibrahim Aljarah , Hossam Faris , Pornpit Wongthongtham

Knowledge Graph Embedding (KGE) aims to represent entities and relations of knowledge graph in a low-dimensional continuous vector space. Recent works focus on incorporating structural knowledge with additional information, such as entity…

Computation and Language · Computer Science 2018-08-14 Kai Wang , Yu Liu , Xiujuan Xu , Dan Lin

Knowledge graphs (KGs) are the cornerstone of the semantic web, offering up-to-date representations of real-world entities and relations. Yet large language models (LLMs) remain largely static after pre-training, causing their internal…

Computation and Language · Computer Science 2026-03-24 Songlin Zhai , Guilin Qi , Yue Wang , Yuan Meng

Biomedical knowledge graphs (KGs) encode vast, heterogeneous information spanning literature, genes, pathways, drugs, diseases, and clinical trials, but leveraging them collectively for scientific discovery remains difficult. Their…

Information Retrieval · Computer Science 2026-01-21 Zifeng Wang , Zheng Chen , Ziwei Yang , Xuan Wang , Qiao Jin , Yifan Peng , Zhiyong Lu , Jimeng Sun

Knowledge graphs (KGs) of real-world facts about entities and their relationships are useful resources for a variety of natural language processing tasks. However, because knowledge graphs are typically incomplete, it is useful to perform…

Computation and Language · Computer Science 2020-10-28 Dat Quoc Nguyen

Reasoning is a fundamental problem for computers and deeply studied in Artificial Intelligence. In this paper, we specifically focus on answering multi-hop logical queries on Knowledge Graphs (KGs). This is a complicated task because, in…

Artificial Intelligence · Computer Science 2022-09-30 Alfonso Amayuelas , Shuai Zhang , Susie Xi Rao , Ce Zhang

Embedding knowledge graphs (KGs) for multi-hop logical reasoning is a challenging problem due to massive and complicated structures in many KGs. Recently, many promising works projected entities and queries into a geometric space to…

Machine Learning · Computer Science 2023-04-25 Dong Yang , Peijun Qing , Yang Li , Haonan Lu , Xiaodong Lin

Learning knowledge graph (KG) embeddings is an emerging technique for a variety of downstream tasks such as summarization, link prediction, information retrieval, and question answering. However, most existing KG embedding models neglect…

Databases · Computer Science 2020-04-30 Gengchen Mai , Krzysztof Janowicz , Ling Cai , Rui Zhu , Blake Regalia , Bo Yan , Meilin Shi , Ni Lao

Recently, several studies have explored methods for using KG embedding to answer logical queries. These approaches either treat embedding learning and query answering as two separated learning tasks, or fail to deal with the variability of…

Machine Learning · Computer Science 2019-10-02 Gengchen Mai , Krzysztof Janowicz , Bo Yan , Rui Zhu , Ling Cai , Ni Lao

Knowledge graph (KG) alignment - the task of recognizing entities referring to the same thing in different KGs - is recognized as one of the most important operations in the field of KG construction and completion. However, existing…

Computation and Language · Computer Science 2022-03-16 Vinh Van Tong , Thanh Trung Huynh , Thanh Tam Nguyen , Hongzhi Yin , Quoc Viet Hung Nguyen , Quyet Thang Huynh

Knowledge Graph Embedding methods aim at representing entities and relations in a knowledge base as points or vectors in a continuous vector space. Several approaches using embeddings have shown promising results on tasks such as link…

Computation and Language · Computer Science 2018-11-12 Tommaso Soru , Stefano Ruberto , Diego Moussallem , André Valdestilhas , Alexander Bigerl , Edgard Marx , Diego Esteves

Knowledge Graphs have been one of the fundamental methods for integrating heterogeneous data sources. Integrating heterogeneous data sources is crucial, especially in the biomedical domain, where central data-driven tasks such as drug…

Machine Learning · Computer Science 2020-12-22 Islam Akef Ebeid , Majdi Hassan , Tingyi Wanyan , Jack Roper , Abhik Seal , Ying Ding

Knowledge graphs (KGs) capture knowledge in the form of head--relation--tail triples and are a crucial component in many AI systems. There are two important reasoning tasks on KGs: (1) single-hop knowledge graph completion, which involves…

Machine Learning · Computer Science 2021-11-03 Hongyu Ren , Hanjun Dai , Bo Dai , Xinyun Chen , Denny Zhou , Jure Leskovec , Dale Schuurmans
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