Related papers: On the enumeration of leaf-labelled increasing tre…
Generating trees are a useful technique in the enumeration of various combinatorial objects, particularly restricted permutations. Quite often the generating tree for the set of permutations avoiding a set of patterns requires infinitely…
We present a new probabilistic proof of Otter's asymptotic formula for the number of unlabelled trees with a given number of vertices. We additionally prove a new approximation result, showing that the total variation distance between…
The ongoing explosion of genome sequence data is transforming how we reconstruct and understand the histories of biological systems. Across biological scales, from individual cells to populations and species, trees-based models provide a…
We provide a logarithmic upper bound for the disentangling number on unordered lists of leaf labeled trees. This results is useful for analyzing phylogenetic mixture models. The proof depends on interpreting multisets of trees as high…
A chief problem in phylogenetics and database theory is the computation of a maximum consistent tree from a set of rooted or unrooted trees. A standard input are triplets, rooted binary trees on three leaves, or quartets, unrooted binary…
Consider a continuous-time binary branching process conditioned to have population size n at some time t, and with a chance p for recording each extinct individual in the process. Within the family tree of this process, we consider the…
We first show that increasing trees are in bijection with set compositions, extending simultaneously a recent result on trees due to Tonks and a classical result on increasing binary trees. We then consider algebraic structures on the…
A closed-form formula is derived for the number of occurrences of matches of a multiset of patterns among all ordered (plane-planted) trees with a given number of edges. A pattern looks like a tree, with internal nodes and leaves, but also…
In analogy to other concepts of a similar nature, we define the inducibility of a rooted binary tree. Given a fixed rooted binary tree $B$ with $k$ leaves, we let $\gamma(B,T)$ be the proportion of all subsets of $k$ leaves in $T$ that…
Binary rooted trees, both in the ordered and in the un-ordered case, are well studied structures in the field of combinatorics. The aim of this work is to study particular patterns in these classes of trees. We consider completely…
In this paper, we generalize 2-trees by replacing triangles by quadrilaterals, pentagons or $k$-sided polygons ($k$-gons), where $k\geq 3$ is fixed. This generalization, to $k$-gonal 2-trees, is natural and is closely related, in the planar…
This article investigates combinatorial properties of non-ambiguous trees. These objects we define may be seen either as binary trees drawn on a grid with some constraints, or as a subset of the tree-like tableaux previously defined by…
A widely used method for determining the similarity of two labeled trees is to compute a maximum agreement subtree of the two trees. Previous work on this similarity measure is only concerned with the comparison of labeled trees of two…
The entities in directed networks arising from real-world interactions are often naturally organized under some hierarchical structure. Given a directed, weighted, graph with edges and node labels, we introduce ranking problem where the…
In light of the grammar given by Ji for the $(\alpha,\beta)$-Eulerian polynomials introduced by Carlitz and Scoville, we provide a labeling scheme for increasing binary trees. In this setting, we obtain a combinatorial interpretation of the…
Tanglegrams are a special class of graphs appearing in applications concerning cospeciation and coevolution in biology and computer science. They are formed by identifying the leaves of two rooted binary trees. We give an explicit formula…
We derive the asymptotic distribution of the total length $L_n$ of a $\operatorname {Beta}(2-\alpha,\alpha)$-coalescent tree for $1<\alpha<2$, starting from $n$ individuals. There are two regimes: If $\alpha\le1/2(1+\sqrt{5})$, then $L_n$…
We identify the complexity of the classification problem for automorphisms of a given countable regularly branching tree up to conjugacy. We consider both the rooted and unrooted cases. Additionally, we calculate the complexity of the…
The quantity that captures the asymptotic value of the maximum number of appearances of a given topological tree (a rooted tree with no vertices of outdegree $1$) $S$ with $k$ leaves in an arbitrary tree with sufficiently large number of…
A multilabeled tree (or MUL-tree) is a rooted tree in which every leaf is labelled by an element from some set, but in which more than one leaf may be labelled by the same element of that set. In phylogenetics, such trees are used in…