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Whether a population of decision-making individuals will reach a state of satisfactory decisions is a fundamental problem in studying collective behaviors. In the framework of evolutionary game theory and by means of potential functions,…

Multiagent Systems · Computer Science 2022-01-13 Negar Sakhaei , Zeinab Maleki , Pouria Ramazi

Understanding to what extent stem cell potential is a cell-intrinsic property, or an emergent behavior coming from global tissue dynamics and geometry, is a key outstanding question of systems and stem cell biology. Here, we propose a…

We study the stochastic dynamics of coupled states with transition probabilities depending on local persistence, this is, the time since a state has changed. When the population has a preference to adopt older states the system orders…

Physics and Society · Physics 2016-03-22 Toni Pérez , Konstantin Klemm , Víctor M. Eguíluz

Cells coexist together in colonies or as tissues. Their behaviour is controlled by an interplay between intercellular forces and biochemical regulation. We develop a simple model of the cell cycle, the fundamental regulatory network…

Biological Physics · Physics 2021-08-04 Jintao Li , Simon K. Schnyder , Matthew S. Turner , Ryoichi Yamamoto

Stem cells have the potential to produce lineages of non-stem cell populations (differentiated cells) via a ubiquitous hierarchal division scheme. Differentiation of a stem cell into (partially) differentiated cells can happen either…

Cell Behavior · Quantitative Biology 2014-11-07 Kamran Kaveh , Mohammad Kohandel , Siv Sivaloganathan

Human aging is a process controlled by both genetics and environment. Many studies have been conducted to identify a subset of genes related to aging from the human genome. Biologists implicitly categorize age-related genes into genes that…

Genomics · Quantitative Biology 2023-11-17 Salman Mohamadi , Donald A. Adjeroh

Cancer development is a multistep process often starting with a single cell in which a number of epigenetic and genetic alterations have accumulated thus transforming it into a tumor cell. The progeny of such a single benign tumor cell…

Tissues and Organs · Quantitative Biology 2022-09-21 Steffen Lange , Richard Mogwitz , Denis Hünniger , Anja Voss-Böhme

The diversity of cell populations is regulated by extracellular and intracellular variability. The latter includes genetic, epigenetic and stochastic variability, all contributing to the experimentally observed heterogeneity in response to…

Cell Behavior · Quantitative Biology 2011-01-18 Joanna Skommer , Subhadip Raychaudhuri , Donald Wlodkowic

In addressing the origins of Darwinian evolution, recent experimental work has been focussed on the discovery of simple physical effects which would provide a relevant selective advantage to protocells competing with each other for a…

Quantitative Methods · Quantitative Biology 2014-07-15 Ben Shirt-Ediss , Kepa Ruiz-Mirazo , Fabio Mavelli , Ricard V. Solé

Ecological resilience refers to the ability of a system to retain its state when subject to state variables perturbations or parameter changes. While understanding and quantifying resilience is crucial to anticipate the possible regime…

Dynamical Systems · Mathematics 2019-05-10 Artur César Fassoni , Denis de Carvalho Braga

Differentiation is a key cellular process in normal tissue development that is significantly altered in cancer. Although molecular signatures characterising pluripotency and multipotency exist, there is, as yet, no single quantitative mark…

Explaining biodiversity is a fundamental issue in ecology. A long-standing puzzle lies in the paradox of the plankton: many species of plankton feeding on a limited variety of resources coexist, apparently flouting the competitive exclusion…

Populations and Evolution · Quantitative Biology 2025-06-18 Ju Kang , Shijie Zhang , Yiyuan Niu , Fan Zhong , Xin Wang

Repeated interaction between individuals is the main mechanism for maintaining cooperation in social dilemma situations. Variants of tit-for-tat (repeating the previous action of the opponent) and the win-stay lose-shift strategy are known…

Populations and Evolution · Quantitative Biology 2011-11-08 Shoma Tanabe , Naoki Masuda

This study investigates the role of spatial segregation, prompted by competition avoidance, as a key mechanism for emergent coexistence within microbial communities. Recognizing these communities as complex adaptive systems, we challenge…

Physics and Society · Physics 2024-03-12 Mattia Mattei , Alex Arenas

Nutrients from a flowering plant are shared by its pollinators, giving rise to competition in the latter. Such exploitative competition of pollinators can limit their abundance and affect the global organization of the mutualistic…

Populations and Evolution · Quantitative Biology 2019-04-02 Seong Eun Maeng , Jae Woo Lee , Deok-Sun Lee

Individual cells exhibit specific proliferative responses to changes in microenvironmental conditions. Whether such potential is constrained by the cell density throughout the growth process is however unclear. Here, we identify a…

Cell cultures exhibit rich and complex behaviors driven by dynamic metabolic interactions among cells. In this work, we present a model that captures these interactions through a framework inspired by statistical mechanics. Using Monte…

Biological Physics · Physics 2025-09-25 A. R. Batista-Tomás , C. Díaz-Faloh , R. Mulet

Ethnocentrism is a behavioral strategy seen on every scale of social interaction. Game-theory models demonstrate that evolution selects ethnocentrism because it boosts cooperation, which increases reproductive fitness. However, some believe…

Populations and Evolution · Quantitative Biology 2015-05-01 Caitlin J. Mouri , Thomas R. Shultz

There has been a recent surge of interest in what causes aging. This has been matched by unprecedented research investment in the field from tech companies. But, despite considerable effort from a broad range of researchers, we do not have…

Populations and Evolution · Quantitative Biology 2022-10-26 Thomas Fink , Yang-Hui He

Motivated by the wide range of known self-replicating systems, some far from genetics, we study a system composed by individuals having an internal dynamics with many possible states that are partially stable, with varying mutation rates.…

Biological Physics · Physics 2015-10-07 Tommaso Brotto , Guy Bunin , Jorge Kurchan