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Graph foundation models have demonstrated remarkable adaptability across diverse downstream tasks through large-scale pretraining on graphs. However, existing implementations of the backbone model, graph transformers, are typically limited…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-04-21 Jun-Liang Lin , Kamesh Madduri , Mahmut Taylan Kandemir

Deep learning-based approaches, such as AlphaFold2 (AF2), have significantly advanced protein tertiary structure prediction, achieving results comparable to real biological experimental methods. While AF2 has shown limitations in predicting…

Biomolecules · Quantitative Biology 2025-01-23 Zhongju Yuan , Tao Shen , Sheng Xu , Leiye Yu , Ruobing Ren , Siqi Sun

Multimodal surface material classification plays a critical role in advancing tactile perception for robotic manipulation and interaction. In this paper, we present Surformer v2, an enhanced multi-modal classification architecture designed…

Robotics · Computer Science 2025-09-08 Manish Kansana , Sindhuja Penchala , Shahram Rahimi , Noorbakhsh Amiri Golilarz

Deep Reinforcement Learning (DRL) has emerged as a promising approach for handling highly dynamic and nonlinear Active Flow Control (AFC) problems. However, the computational cost associated with training DRL models presents a significant…

Machine Learning · Computer Science 2024-09-27 Wang Jia , Hang Xu

On-device training is essential for neural networks (NNs) to continuously adapt to new online data, but can be time-consuming due to the device's limited computing power. To speed up on-device training, existing schemes select trainable NN…

Machine Learning · Computer Science 2023-12-25 Kai Huang , Boyuan Yang , Wei Gao

Recently, DeepNorm scales Transformers into extremely deep (i.e., 1000 layers) and reveals the promising potential of deep scaling. To stabilize the training of deep models, DeepNorm (Wang et al., 2022) attempts to constrain the model…

Machine Learning · Computer Science 2023-05-05 Yijin Liu , Xianfeng Zeng , Fandong Meng , Jie Zhou

Pipeline parallelism is widely used to train large language models (LLMs). However, increasing heterogeneity in model architectures exacerbates pipeline bubbles, thereby reducing training efficiency. Existing approaches overlook the…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-09-30 Jihu Guo , Tenghui Ma , Wei Gao , Peng Sun , Jiaxing Li , Xun Chen , Yuyang Jin , Dahua Lin

AI accelerator processing capabilities and memory constraints largely dictate the scale in which machine learning workloads (e.g., training and inference) can be executed within a desirable time frame. Training a state of the art,…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-10-12 Michael Benington , Leo Phan , Chris Pierre Paul , Evan Shoemaker , Priyanka Ranade , Torstein Collett , Grant Hodgson Perez , Christopher Krieger

Parameter-efficient transfer learning (PETL), i.e., fine-tuning a small portion of parameters, is an effective strategy for adapting pre-trained models to downstream domains. To further reduce the memory demand, recent PETL works focus on…

Computer Vision and Pattern Recognition · Computer Science 2024-03-12 Haiwen Diao , Bo Wan , Ying Zhang , Xu Jia , Huchuan Lu , Long Chen

Atomistic simulation drives scientific advances in modern material science and accounts for a significant proportion of wall time on High Performance Computing facilities. It is important that algorithms are efficient and implementations…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-07-21 William Robert Saunders , James Grant , Eike Hermann Müller

Machine learning is evolving towards high-order models that necessitate pre-training on extensive datasets, a process associated with significant overheads. Traditional models, despite having pre-trained weights, are becoming obsolete due…

Machine Learning · Computer Science 2024-05-10 Chenhui Xu , Xinyao Wang , Fuxun Yu , Jinjun Xiong , Xiang Chen

The coupling of deep reinforcement learning to numerical flow control problems has recently received a considerable attention, leading to groundbreaking results and opening new perspectives for the domain. Due to the usually high…

Machine Learning · Computer Science 2023-07-14 J. Viquerat , E. Hachem

As neural networks are increasingly employed in machine learning practice, how to efficiently share limited training resources among a diverse set of model training tasks becomes a crucial issue. To achieve better utilization of the shared…

Machine Learning · Computer Science 2021-04-27 Rui Liu , Sanjay Krishnan , Aaron J. Elmore , Michael J. Franklin

To optimize large Transformer model training, both efficient parallel computing and advanced data management are indispensable. However, current methods often assume a stable and uniform training workload, neglecting data-induced…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-10-16 Haoyang Li , Fangcheng Fu , Sheng Lin , Hao Ge , Xuanyu Wang , Jiawen Niu , Jinbao Xue , Yangyu Tao , Di Wang , Jie Jiang , Bin Cui

Deploying deep learning (DL) models across multiple compute devices to train large and complex models continues to grow in importance because of the demand for faster and more frequent training. Data parallelism (DP) is the most widely used…

Machine Learning · Computer Science 2022-11-08 Saptadeep Pal , Eiman Ebrahimi , Arslan Zulfiqar , Yaosheng Fu , Victor Zhang , Szymon Migacz , David Nellans , Puneet Gupta

Pipeline parallelism enables efficient training of Large Language Models (LLMs) on large-scale distributed accelerator clusters. Yet, pipeline bubbles during startup and tear-down reduce the utilization of accelerators. Although efficient…

Machine Learning · Computer Science 2023-05-16 Kazuki Osawa , Shigang Li , Torsten Hoefler

Large-scale autoregressive models have demonstrated remarkable capabilities in image generation. However, their sequential raster-scan decoding relies on strictly next-token prediction, making inference prohibitively expensive. Existing…

Computer Vision and Pattern Recognition · Computer Science 2026-05-13 Junkang Zhou , Yefei He , Feng Chen , Weijie Wang , Bohan Zhuang

The nonlinear nature of chaotic systems results in extreme sensitivity to initial conditions and highly intricate dynamical behaviors, posing fundamental challenges for accurately predicting their evolution. To overcome the limitation that…

Machine Learning · Computer Science 2026-03-18 Junwen Ma , Mingyu Ge , Yisen Wang , Yong Zhang , Weicheng Fu

In this paper, we propose an end-to-end deep learning model, called E2Efold, for RNA secondary structure prediction which can effectively take into account the inherent constraints in the problem. The key idea of E2Efold is to directly…

Machine Learning · Computer Science 2020-06-11 Xinshi Chen , Yu Li , Ramzan Umarov , Xin Gao , Le Song

Machine-learning force fields can deliver accurate molecular dynamics (MD) at high computational cost. For SO(3)-equivariant models such as MACE, there is little systematic evidence on whether reduced-precision arithmetic and GPU-optimized…

Machine Learning · Computer Science 2025-10-29 Alexandre Benoit