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During the million years of evolution, gas dust and ice in protoplanetary disks can be chemically reprocessed. There are evidences that the gas-phase carbon and oxygen abundances are sub-solar in disks belonging to nearby star forming…

Solar and Stellar Astrophysics · Physics 2020-07-01 D. Fedele , C. Favre

Electron and x-ray microscopes allow one to image the entire, unlabeled structure of hydrated materials at a resolution well beyond what visible light microscopes can achieve. However, both approaches involve ionizing radiation, so that…

Applied Physics · Physics 2020-04-22 Ming Du , Chris Jacobsen

The mode of action of proteins is to a large extent given by their ability to adopt different conformations. This is why imaging single biomolecules at atomic resolution is one of the ultimate goals of biophysics and structural biology. The…

Biological Physics · Physics 2012-09-27 Jean-Nicolas Longchamp , Tatiana Latychevskaia , Conrad Escher , Hans-Werner Fink

Atomic-scale mapping of the chemical elements in materials is now possible using aberration-corrected electron microscopes but delocalization and multiple scattering can confound image interpretation. Here we report atomic-resolution…

Materials Science · Physics 2011-10-25 Huolin L. Xin , Christian Dwyer , David A. Muller

The origin and early evolution of eukaryotes are one of the major transitions in the evolution of life on earth. One of its most interesting aspects is the emergence of cellular organelles, their dynamics, their functions, and their…

Populations and Evolution · Quantitative Biology 2022-02-18 Parsifal Fidelio Islas-Morales , Luis Felipe Jimenez-Garcia

Cryo-electron microscopy (cryo-EM) is a powerful technique in structural biology and drug discovery, enabling the study of biomolecules at high resolution. Significant advancements by structural biologists using cryo-EM have led to the…

Biomolecules · Quantitative Biology 2024-12-05 Yi Zhou , Yilai Li , Jing Yuan , Quanquan Gu

A general theoretical framework is put forth to organize and understand various observed phenomena and mathematical relationships in the field of molecular biology. By modeling each cell in eukaryotic organisms as a processor having a…

Other Quantitative Biology · Quantitative Biology 2013-12-18 Barry D. Jacobson

The current state of the art in structural biology is led by NMR, X-ray crystallography and TEM investigations. These powerful tools however all rely on averaging over a large ensemble of molecules. Here, we present an alternative concept…

Atomic and Molecular Clusters · Physics 2015-12-15 Tatiana Latychevskaia , Jean-Nicolas Longchamp , Conrad Escher , Hans-Werner Fink

Complex biological systems are very robust to genetic and environmental changes at all levels of organization. Many biological functions of Escherichia coli metabolism can be sustained against single-gene or even multiple-gene mutations by…

Molecular Networks · Quantitative Biology 2007-08-30 Pan-Jun Kim , Dong-Yup Lee , Tae Yong Kim , Kwang Ho Lee , Hawoong Jeong , Sang Yup Lee , Sunwon Park

Cellular aggregates play a significant role in the evolution of biological systems such as tumor growth, tissue spreading, wound healing, and biofilm formation. Analysis of such biological systems, in principle, includes examining the…

Numerical Analysis · Mathematics 2022-08-17 Soheil Firooz , Stefan Kaessmair , Vasily Zaburdaev , Ali Javili , Paul Steinmann

Coral reefs play a vital role in maintaining the ecological balance of the marine ecosystem. Various marine organisms depend on coral reefs for their existence and their natural processes. Coral reefs provide the necessary habitat for…

A deep understanding of molecular photo-transformations is challenging because of the complex interaction between the configurations of electrons and nuclei. An initial optical excitation dissipates energy into electronic and structural…

Electron energy-loss spectroscopy (EELS) is a powerful tool for imaging chemical variations at the nanoscale. Here, we investigate a polymer/organic small molecule-blend used as absorber layer in an organic solar cell and employ EELS for…

Whether it is fluorescence emission from asteroids and moons, solar wind charge exchange from comets, exospheric escape from Mars, pion reactions on Venus, sprite lighting on Saturn, or the Io plasma torus in the Jovian magnetosphere, the…

Instrumentation and Methods for Astrophysics · Physics 2020-08-17 Jaesub Hong , Suzanne Romaine , Larry Nittler , Martin Elvis , Ian Crawford , Graziella Branduardi-Raymont , Lucy Rim , Scott Wolk

The assessment of microbial species biodiversity is essential in ecology and evolutionary biology (Reaka-Kudla et al. 1996), but especially challenging for communities of microorganisms found in the environment (Das et al. 2006, Hillebrand…

Populations and Evolution · Quantitative Biology 2020-11-03 Arianna I. Krinos , Sarah K. Hu , Natalie R. Cohen , Harriet Alexander

A new model is suggested and used to mimic various spatial or temporal designs in biological or non biological formations where the focus is on the normal or irregular electrical signals coming from human heart (ECG) or brain (EEG). The…

Biological Physics · Physics 2008-07-08 Caglar Tuncay

Ultrafast electron microscopy (UEM) has found widespread applications in physics, chemistry, and materials science, enabling real-space imaging of dynamics on ultrafast timescales. Recent advances have pushed the temporal resolution of UEM…

The vast chemical space of possible small molecules, estimated at 10^60 compounds for molecules composed of just C, N, O, and S, is only sparsely occupied by biology. We propose that where life selects molecules within this space…

Diatoms are microscopic algae found in all of Earths water courses. They produce frustules, porous silica exoskeletons, grown by precipitation of silicic acid from water. Frustule components, known as girdles, from some diatom species also…

Since the discovery of the presence of biogenic magnetites in living organisms, there have been speculations on the role that these biomagnetites play in cellular processes. It seems that the formation of biomagnetite crystals is a…

Biological Physics · Physics 2010-12-16 Istvan Bokkon , Vahid Salari