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In this work, we present a manually annotated corpus for Adverse Event (AE) extraction from discharge summaries of elderly patients, a population often underrepresented in clinical NLP resources. The dataset includes 14 clinically…

Computation and Language · Computer Science 2025-06-19 Imane Guellil , Salomé Andres , Atul Anand , Bruce Guthrie , Huayu Zhang , Abul Hasan , Honghan Wu , Beatrice Alex

Artificial intelligence systems are now deployed at scale across sectors, accompanied by a growing number of real-world incidents ranging from misinformation and cybercrime to autonomous-system failures. Databases of AI incidents index…

Computers and Society · Computer Science 2026-04-23 Sophia Abraham , Taiye Chen , Cyril Chhun , Giovanna Jaramillo-Gutierrez , Simon Mylius , Sayash Raaj , Peter Slattery , Sean McGregor

We study the problem of detecting adverse drug events in electronic healthcare records. The challenge in this work is to aggregate heterogeneous data types involving diagnosis codes, drug codes, as well as lab measurements. An earlier…

Machine Learning · Computer Science 2019-07-16 Maria Bampa , Panagiotis Papapetrou

Developing new drugs for target diseases is a time-consuming and expensive task, drug repurposing has become a popular topic in the drug development field. As much health claim data become available, many studies have been conducted on the…

Machine Learning · Computer Science 2023-02-22 Yaobin Ling , Pulakesh Upadhyaya , Luyao Chen , Xiaoqian Jiang , Yejin Kim

Research artifacts are widely shared to support reproducibility, and artifact evaluation (AE) has become common at many leading conferences. However, AE mainly checks whether artifacts work as claimed and can be reproduced. It largely…

Cryptography and Security · Computer Science 2026-05-08 Nanda Rani , Christian Rossow

Mining social media messages for health and drug related information has received significant interest in pharmacovigilance research. Social media sites (e.g., Twitter), have been used for monitoring drug abuse, adverse reactions of drug…

Computation and Language · Computer Science 2018-05-17 Debanjan Mahata , Jasper Friedrichs , Hitkul , Rajiv Ratn Shah

This paper introduces a new IncidentAI dataset for safety prevention. Different from prior corpora that usually contain a single task, our dataset comprises three tasks: named entity recognition, cause-effect extraction, and information…

Computation and Language · Computer Science 2023-10-24 Shumpei Inoue , Minh-Tien Nguyen , Hiroki Mizokuchi , Tuan-Anh D. Nguyen , Huu-Hiep Nguyen , Dung Tien Le

Relevant information in documents is often summarized in tables, helping the reader to identify useful facts. Most benchmark datasets support either document layout analysis or table understanding, but lack in providing data to apply both…

Computation and Language · Computer Science 2023-02-14 Andrea Gemelli , Emanuele Vivoli , Simone Marinai

Adverse drug events (ADE) are prevalent and costly. Clinical trials are constrained in their ability to identify potential ADEs, motivating the development of spontaneous reporting systems for post-market surveillance. Statistical methods…

Computation and Language · Computer Science 2020-08-11 Xiruo Ding , Trevor Cohen

Despite extensive safety assessments of drugs prior to their introduction to the market, certain adverse drug reactions (ADRs) remain undetected. The primary objective of pharmacovigilance is to identify these ADRs (i.e., signals). In…

Methodology · Statistics 2024-04-23 Louis Dijkstra , Tania Schink , Ronja Foraita

Event detection (ED) identifies and classifies event triggers from unstructured texts, serving as a fundamental task for information extraction. Despite the remarkable progress achieved in the past several years, most research efforts focus…

Computation and Language · Computer Science 2022-11-28 Xiangyu Xi , Jianwei Lv , Shuaipeng Liu , Wei Ye , Fan Yang , Guanglu Wan

To analyze the impacts of certain types of public health interventions we need to estimate the treatment effects and outcomes as these apply to heterogeneous open populations. Dynamically modifying populations containing risk groups that…

Methodology · Statistics 2019-10-14 Aditi Shenvi , Jim Q. Smith

The challenge of recognizing named entities in a given text has been a very dynamic field in recent years. This is due to the advances in neural network architectures, increase of computing power and the availability of diverse labeled…

Computation and Language · Computer Science 2023-01-10 Nasi Jofche , Kostadin Mishev , Riste Stojanov , Milos Jovanovik , Dimitar Trajanov

Process extraction from text is an important task of process discovery, for which various approaches have been developed in recent years. However, in contrast to other information extraction tasks, there is a lack of gold-standard corpora…

Computation and Language · Computer Science 2025-07-22 Patrizio Bellan , Han van der Aa , Mauro Dragoni , Chiara Ghidini , Simone Paolo Ponzetto

Synthesizing information from multiple data sources plays a crucial role in the practice of modern medicine. Current applications of artificial intelligence in medicine often focus on single-modality data due to a lack of publicly…

Suicide is the tenth leading cause of death in the United States, yet evidence on medication-related risk or protection remains limited. Most post-marketing studies examine one drug class at a time or rely on empirical-Bayes shrinkage with…

Applications · Statistics 2026-01-27 Soumya Sahu , Kwan Hur , Dulal K. Bhaumik , Robert Gibbons

Reliable drug safety reference databases are essential for pharmacovigilance, yet existing resources like SIDER are outdated and static. We introduce PVLens, an automated system that extracts labeled safety information from FDA Structured…

Computation and Language · Computer Science 2025-03-28 Jeffery L Painter , Gregory E Powell , Andrew Bate

The growing use of digital communication platforms has given rise to various criminal activities, such as grooming and drug dealing, which pose significant challenges to law enforcement and forensic experts. This paper presents a supervised…

Personal Health Systems (PHS) are mobile solutions tailored to monitoring patients affected by chronic non communicable diseases. A patient affected by a chronic disease can generate large amounts of events. Type 1 Diabetic patients…

Artificial Intelligence · Computer Science 2017-10-04 Stefano Bromuri , Albert Brugues de la Torre , Fabien Duboisson , Michael Schumacher

Adverse event (AE) extraction following COVID-19 vaccines from text data is crucial for monitoring and analyzing the safety profiles of immunizations. Traditional deep learning models are adept at learning intricate feature representations…

Computation and Language · Computer Science 2024-06-27 Yiming Li , Deepthi Viswaroopan , William He , Jianfu Li , Xu Zuo , Hua Xu , Cui Tao