English
Related papers

Related papers: PHEE: A Dataset for Pharmacovigilance Event Extrac…

200 papers

Extracting fine-grained experimental findings from literature can provide dramatic utility for scientific applications. Prior work has developed annotation schemas and datasets for limited aspects of this problem, failing to capture the…

Computation and Language · Computer Science 2024-04-26 Aakanksha Naik , Bailey Kuehl , Erin Bransom , Doug Downey , Tom Hope

Document-level event extraction aims to extract structured event information from unstructured text. However, a single document often contains limited event information and the roles of different event arguments may be biased due to the…

Computation and Language · Computer Science 2024-08-27 Qiang Gao , Zixiang Meng , Bobo Li , Jun Zhou , Fei Li , Chong Teng , Donghong Ji

Adverse drug events (ADEs) are a major safety issue in clinical trials. Thus, predicting ADEs is key to developing safer medications and enhancing patient outcomes. To support this effort, we introduce CT-ADE, a dataset for multilabel ADE…

Computation and Language · Computer Science 2025-03-11 Anthony Yazdani , Alban Bornet , Philipp Khlebnikov , Boya Zhang , Hossein Rouhizadeh , Poorya Amini , Douglas Teodoro

Adverse drug events (ADEs) are unexpected incidents caused by the administration of a drug or medication. To identify and extract these events, we require information about not just the drug itself but attributes describing the drug (e.g.,…

Computation and Language · Computer Science 2021-04-23 Darshini Mahendran , Bridget T. McInnes

Drug safety research is crucial for maintaining public health, often requiring comprehensive data support. However, the resources currently available to the public are limited and fail to provide a comprehensive understanding of the…

Human-Computer Interaction · Computer Science 2024-07-03 Artem Bobrov , Domantas Saltenis , Zhaoyue Sun , Gabriele Pergola , Yulan He

Adverse Event (ADE) extraction is one of the core tasks in digital pharmacovigilance, especially when applied to informal texts. This task has been addressed by the Natural Language Processing community using large pre-trained language…

Computation and Language · Computer Science 2023-06-09 Simone Scaboro , Beatrice Portellia , Emmanuele Chersoni , Enrico Santus , Giuseppe Serra

Nested Event Extraction (NEE) aims to extract complex event structures where an event contains other events as its arguments recursively. Nested events involve a kind of Pivot Elements (PEs) that simultaneously act as arguments of…

Computation and Language · Computer Science 2024-04-09 Weicheng Ren , Zixuan Li , Xiaolong Jin , Long Bai , Miao Su , Yantao Liu , Saiping Guan , Jiafeng Guo , Xueqi Cheng

Drug Names, Population Level Surveillance and the FDA's Adverse Event Reporting System: An Exploratory Data Survey of Drug Name Incidence and Prevalence, 2004-2012Q2 Purpose: To count and monitor the drug names reported in the publicly…

Computational Engineering, Finance, and Science · Computer Science 2013-09-04 Nick Williams

Adverse Events (AE) are harmful events resulting from the use of medical products. Although social media may be crucial for early AE detection, the sheer scale of this data makes it logistically intractable to analyze using human agents,…

Computation and Language · Computer Science 2021-09-14 Shivam Raval , Hooman Sedghamiz , Enrico Santus , Tuka Alhanai , Mohammad Ghassemi , Emmanuele Chersoni

Event extraction (EE) is a critical direction in the field of information extraction, laying an important foundation for the construction of structured knowledge bases. EE from text has received ample research and attention for years, yet…

Multimedia · Computer Science 2024-08-26 Bin Wang , Meishan Zhang , Hao Fei , Yu Zhao , Bobo Li , Shengqiong Wu , Wei Ji , Min Zhang

Event extraction (EE) is a crucial task aiming at extracting events from texts, which includes two subtasks: event detection (ED) and event argument extraction (EAE). In this paper, we check the reliability of EE evaluations and identify…

Computation and Language · Computer Science 2023-06-16 Hao Peng , Xiaozhi Wang , Feng Yao , Kaisheng Zeng , Lei Hou , Juanzi Li , Zhiyuan Liu , Weixing Shen

Adverse drug events (ADEs) are an important aspect of drug safety. Various texts such as biomedical literature, drug reviews, and user posts on social media and medical forums contain a wealth of information about ADEs. Recent studies have…

Computation and Language · Computer Science 2024-05-21 Shaoxiong Ji , Ya Gao , Pekka Marttinen

Events are essential components of speech and texts, describing the changes in the state of entities. The event extraction task aims to identify and classify events and find their participants according to event schemas. Manually predefined…

Computation and Language · Computer Science 2024-03-20 Haochen Li , Di Geng

With the increase in popularity of deep learning models for natural language processing (NLP) tasks, in the field of Pharmacovigilance, more specifically for the identification of Adverse Drug Reactions (ADRs), there is an inherent need for…

Information Retrieval · Computer Science 2020-04-01 Ramya Tekumalla , Juan M. Banda

In recent years, Internet users are reporting Adverse Drug Events (ADE) on social media, blogs and health forums. Because of the large volume of reports, pharmacovigilance is seeking to resort to NLP to monitor these outlets. We propose for…

Computation and Language · Computer Science 2021-05-20 Beatrice Portelli , Daniele Passabì , Edoardo Lenzi , Giuseppe Serra , Enrico Santus , Emmanuele Chersoni

Understanding medication events in clinical narratives is essential to achieving a complete picture of a patient's medication history. While prior research has explored classification of medication changes from clinical notes, studies to…

Computation and Language · Computer Science 2021-05-20 Diwakar Mahajan , Jennifer J Liang , Ching-Huei Tsou

In the realm of cancer treatment, summarizing adverse drug events (ADEs) reported by patients using prescribed drugs is crucial for enhancing pharmacovigilance practices and improving drug-related decision-making. While the volume and…

Computation and Language · Computer Science 2025-05-08 Sofia Jamil , Aryan Dabad , Bollampalli Areen Reddy , Sriparna Saha , Rajiv Misra , Adil A. Shakur

The diverse relationships among real-world events, including coreference, temporal, causal, and subevent relations, are fundamental to understanding natural languages. However, two drawbacks of existing datasets limit event relation…

Computation and Language · Computer Science 2022-11-15 Xiaozhi Wang , Yulin Chen , Ning Ding , Hao Peng , Zimu Wang , Yankai Lin , Xu Han , Lei Hou , Juanzi Li , Zhiyuan Liu , Peng Li , Jie Zhou

In a typical Event-Based Surveillance setting, a stream of web documents is continuously monitored for disease reporting. A structured representation of the disease reporting events is extracted from the raw text, and the events are then…

Computers and Society · Computer Science 2011-01-05 Avaré Stewar , Ricardo Lage , Ernesto Diaz-Aviles , Peter Dolog

Software security vulnerabilities can lead to severe consequences, making early detection essential. Although code review serves as a critical defense mechanism against security flaws, relevant feedback remains scarce due to limited…

Software Engineering · Computer Science 2026-01-06 Zixiao Zhao , Yanjie Jiang , Hui Liu , Kui Liu , Lu Zhang