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Related papers: Phase separation and dynamical arrest of protein s…

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We show that gels formed by arrested spinodal decomposition of protein solutions exhibit elastic properties in two distinct frequency domains, both elastic moduli exhibiting a remarkably strong dependence on volume fraction. Considering the…

Soft Condensed Matter · Physics 2016-11-26 Thomas Gibaud , Alessio Zaccone , Emanuela Del Gado , Véronique Trappe , Peter Schurtenberger

Motivated by recent studies of colloidal particles in optical tweezer arrays, we study a two-dimensional model of a colloidal suspension in a periodic potential. The particles tend to stay near potential minima, approximating a lattice gas.…

Statistical Mechanics · Physics 2009-11-13 Fabricio Q. Potiguar , Ronald DIckman

Some hard sphere colloidal models have been criticized for inaccurately predicting the solution viscosity of complex biological molecules like proteins. Competing short-range attractions and long-range repulsions, also known as SALR…

Soft Condensed Matter · Physics 2022-09-13 Sabitoj Singh Virk , Patrick T. Underhill

We present a first-principles formalism for studying dynamical heterogeneities in glass forming liquids. Based on the Non-Equilibrium Self-Consistent Generalized Langevin Equation theory, we were able to describe the time-dependent local…

Soft Condensed Matter · Physics 2022-04-06 J. Lira-Escobedo , J. R. Velez-Cordero , Pedro E. Ramírez-González

Here we reveal details of the interaction between human lysozyme proteins, both native and fibrils, and their water environment by intense terahertz time domain spectroscopy. With the aid of a rigorous dielectric model, we determine the…

We present an extension of the Poisson-Boltzmann model in which the solute of interest is immersed in an assembly of self-orienting Langevin water dipoles, anions, cations, and hydrophobic molecules, all of variable densities. Interactions…

Biological Physics · Physics 2021-04-08 Patrice Koehl , Marc Delarue , Henri Orland

Ionic-liquid based acidic aqueous biphasic solutions (AcABS) recently offered a breakthrough in the field of metal recycling. Indeed, the mixture of tributyltetradecylphosphonium chloride (P$_{44414}$Cl) and acid with water content larger…

We have studied a model of a complex fluid consisting of particles interacting through a hard core and a short range attractive potential of both Yukawa and square-well form. Using a hybrid method, including a self-consistent and quite…

We consider the driven dynamics of a probe particle moving through an assembly of particles with competing long-range repulsive and short-range attractive interactions, which form crystal, stripe, labyrinth, and bubble states as the ratio…

Soft Condensed Matter · Physics 2025-01-10 C. Reichhardt , C. J. O. Reichhardt

We consider both equilibrium and kinetic aspects of the phase separation (``thermal faceting") of thermodynamically unstable crystal surfaces into a hill--valley structure. The model we study is an Ising lattice gas for a simple cubic…

Condensed Matter · Physics 2009-10-22 Joel D. Shore , Dirk Jan Bukman

We use molecular dynamics simulations of a simple model to show that dispersions of slightly elongated colloidal particles with long-range dipolar interactions, like ferrofluids, can form a physical (reversible) gel at low volume fractions.…

Soft Condensed Matter · Physics 2007-05-23 Ronald Blaak , Mark A. Miller , Jean-Pierre Hansen

Phase separation plays an role in determining the self-assembly of biological and soft-matter systems. In biological systems, liquid-liquid phase separation inside a cell leads to the formation of various macromolecular aggregates. The…

Soft Condensed Matter · Physics 2024-03-26 Tanmay Biswas , Gerhard Kahl , Gaurav P. Shrivastav

Coarse-graining of fully atomistic molecular dynamics simulations is a long-standing goal in order to allow the description of processes occurring on biologically relevant timescales. For example, the prediction of pathways, rates and…

Biological Physics · Physics 2020-06-12 Steffen Wolf , Benjamin Lickert , Simon Bray , Gerhard Stock

We evaluate the elasticity of arrested short-ranged attractive colloids by combining an analytically solvable elastic model with a hierarchical arrest scheme into a new approach, which allows to discriminate the microscopic (primary…

Soft Condensed Matter · Physics 2015-05-13 Alessio Zaccone , Hua Wu , Emanuela Del Gado

Recent experiments on crosslinked gels quenched from solvent-rich to solvent-poor conditions show solvent-rich domains embedded in a gel-rich matrix. These domains coarsen and then undergo kinetic arrest at micron scales for hours, before…

Soft Condensed Matter · Physics 2026-05-19 Samuel A. Safran

We present simulation results addressing the phenomena of colloidal gelation induced by attractive interactions. The liquid-gas transition is prevented by the glass arrest at high enough attraction strength, resulting in a colloidal gel.…

Soft Condensed Matter · Physics 2015-06-25 A. M. Puertas , M. Fuchs , M. E. Cates

Phase separation is a fairly common physical phenomenon with examples including the formation of water droplets from humid air (fog, rain), the separation of a crystalline structure from an isotropic material such as a liquid or even the…

Probability · Mathematics 2007-05-23 Ágoston Pisztora

We study colloidal particle dynamics of a model glass system using confocal and fluorescence microscopy as the sample evolves from a hard-sphere glass to a liquid with attractive interparticle interactions. The transition from hard-sphere…

Soft Condensed Matter · Physics 2015-05-13 Andrzej Latka , Yilong Han , Ahmed M. Alsayed , Andrew B. Schofield , A. G. Yodh , Piotr Habdas

Hydrodynamics is known to have strong effects on the kinetics of phase separation. There exist open questions on how such effects manifest in systems under confinement. Here, we have undertaken extensive studies of the kinetics of phase…

Soft Condensed Matter · Physics 2025-11-03 Saikat Basu , Suman Majumder , Raja Paul , Subir K. Das

We study the formation of protein-protein encounter complexes with a Langevin equation approach that considers direct, steric and thermal forces. As three model systems with distinctly different properties we consider the pairs…

Biomolecules · Quantitative Biology 2009-11-13 Jakob Schluttig , Denitsa Alamanova , Volkhard Helms , Ulrich S. Schwarz
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