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Related papers: Phase separation and dynamical arrest of protein s…

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We study the diffusion-driven kinetics of phase separation of a symmetric binary mixture (AB), confined in a thin-film geometry between two parallel walls. We consider cases where (a) both walls preferentially attract the same component…

Soft Condensed Matter · Physics 2009-11-11 Subir K. Das , Sanjay Puri , Juergen Horbach , Kurt Binder

The dynamical arrest of gels is the consequence of a well defined structural phase transition, leading to the formation of a spanning cluster of bonded particles. The dynamical glass transition, instead, is not accompanied by any clear…

Soft Condensed Matter · Physics 2016-07-21 Raffaele Pastore , Antonio de Candia , Anallisa Fierro , Massimo Pica Ciamarra , Antonio Coniglio

A description of phase separation kinetics for solid binary (A,B) mixtures in thin film geometry based on the Kawasaki spin-exchange kinetic Ising model is presented in a discrete lattice molecular field formulation. It is shown that the…

Statistical Mechanics · Physics 2009-11-13 Subir K. Das , Jürgen Horbach , Kurt Binder

The connection between domain relaxations at individual scales and the collective heterogeneous response in non-equilibrium systems is a topic of profound interest in recent times. In a model sys- tem of constantly driven oppositely charged…

Soft Condensed Matter · Physics 2016-12-16 Suman Dutta

The dynamics of a folded protein is studied in water and glycerol at a series of temperatures below and above their respective dynamical transition. The system is modeled in two distinct states whereby the protein is decoupled from the bulk…

Soft Condensed Matter · Physics 2008-09-23 C. Atilgan , A. O. Aykut , A. R. Atilgan

The osmotic virial coefficient $B_2$ of globular protein solutions is calculated as a function of added salt concentration at fixed pH by computer simulations of the ``primitive model''. The salt and counter-ions as well as a discrete…

Soft Condensed Matter · Physics 2009-11-07 E. Allahyarov , H. Löwen , J. P. Hansen , A. A. Louis

Spinodal decomposition in a near-critical binary fluid is examined for experimental scenarios in which the liquid is quenched abruptly by changing the pressure and the subsequent phase separation occurs with no heat flow from the outside,…

Statistical Mechanics · Physics 2021-07-06 James P. Donley

The phase behavior of membrane proteins stems from a complex synergy with the amphiphilic molecules required for their solubilization. We show that ionization of a pH-sensitive surfactant, LDAO, bound to a bacterial photosynthetic protein,…

Soft Condensed Matter · Physics 2009-11-07 R. Piazza , M. Pierno , E. Vignati , G. Venturoli , F. Francia , A. Mallardi , G. Palazzo

We investigate by time-resolved Synchrotron ultra-small X-ray scattering the dynamics of liquid-liquid phase-separation (LLPS) of gluten protein suspensions following a temperature quench. Samples at a fixed concentration (237 mg/ml) but…

Soft Condensed Matter · Physics 2019-08-27 A. Banc , J. Pincemaille , S. Costanzo , E. Chauveau , M. s. Appavou , M. H. Morel , P. Menut , L. Ramos

In this paper we demonstrate the feasibility and utility of an augmented version of the Gibbs ensemble Monte Carlo method for computing the phase behavior of systems with strong, extremely short-ranged attractions. For generic potential…

Soft Condensed Matter · Physics 2007-05-23 P. Charbonneau , D. R. Reichman

The process of drying is a simple physical mechanism that drives a system to relax from one equilibrium point to another. The native states of the constituent particles in the droplets can be linked to the emergent morphological patterns…

Soft Condensed Matter · Physics 2021-05-14 Anusuya Pal , Amalesh Gope , Germano S. Iannacchione

Interactions between actin, an anionic polyelectrolyte, and lysozyme, a cationic globular protein, have been examined using a combination of synchrotron small-angle x-ray scattering and molecular dynamics simulations. Lysozyme initially…

We consider the demixing of a binary fluid mixture, under gravity, which is steadily driven into a two phase region by slowly ramping the temperature. We assume, as a first approximation, that the system remains spatially isothermal, and…

Soft Condensed Matter · Physics 2009-11-10 M. E. Cates , J. Vollmer , A. Wagner , D. Vollmer

Using Brownian dynamics computer simulations we show that a two-dimensional suspension of self-propelled ("active") colloidal particles crystallizes at sufficiently high densities. Compared to the equilibrium freezing of passive particles…

Soft Condensed Matter · Physics 2012-06-12 Julian Bialké , Thomas Speck , Hartmut Löwen

Ethanol is a common protein crystallization agent, precipitant, and denaturant, but also alters the dielectric properties of solutions. While ethanol-induced unfolding is largely ascribed to its hydrophobic parts, its effect on protein…

Soft Condensed Matter · Physics 2021-11-03 Jan Hansen , Rajeevann Uthayakumar , Jan Skov Pedersen , Stefan U. Egelhaaf , Florian Platten

The problem of measuring nontrivial static correlations in deeply supercooled liquids made recently some progress thanks to the introduction of amorphous boundary conditions, in which a set of free particles is subject to the effect of a…

Disordered Systems and Neural Networks · Physics 2015-06-11 G. Gradenigo , R. Trozzo , A. Cavagna , T. S. Grigera , P. Verrocchio

We present a combined experimental and numerical study of the equilibrium cluster formation in globular protein solutions under no-added salt conditions. We show that a cluster phase emerges as a result of a competition between a long-range…

The rheology of a dilute binary mixture of inertial suspension under simple shear flow is analyzed in the context of the Boltzmann kinetic equation. The effect of the surrounding viscous gas on the solid particles is accounted for by means…

Soft Condensed Matter · Physics 2023-11-27 Satoshi Takada , Hisao Hayakawa , Vicente Garzó

We describe a simple nearest-neighbor Ising model that is capable of supporting a gas, liquid, crystal, in characteristic relationship to each other. As the parameters of the model are varied one obtains characteristic patterns of phase…

Statistical Mechanics · Physics 2009-11-10 Davide Cellai , Hector Cuevas , Aonghus Lawlor , Gavin D. McCullagh , Kenneth A. Dawson

We analyze the early phase of brine entrapment in sea ice, using a phase field model. This model for a first-order phase transition couples non-conserved order parameter kinetics to salt diffusion. The evolution equations are derived from a…

Atmospheric and Oceanic Physics · Physics 2014-05-05 Silke Thoms , Bernd Kutschan , Klaus Morawetz