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We develop a novel method for detection of signals and reconstruction of images in the presence of random noise. The method uses results from percolation theory. We specifically address the problem of detection of multiple objects of…

Applications · Statistics 2013-12-02 Mikhail Langovoy , Michael Habeck , Bernhard Schölkopf

Persistent homology is a cornerstone of topological data analysis, offering a multiscale summary of topology with robustness to nuisance transformations, such as rotations and small deformations. Persistent homology has seen broad use…

Methodology · Statistics 2025-11-19 Zitian Wu , Arkaprava Roy , Leo L. Duan

We present a pipeline for characterizing and constraining initial conditions in cosmology via persistent homology. The cosmological observable of interest is the cosmic web of large scale structure, and the initial conditions in question…

Cosmology and Nongalactic Astrophysics · Physics 2020-12-08 Alex Cole , Matteo Biagetti , Gary Shiu

Phenomenological (P-type) bifurcations are qualitative changes in stochastic dynamical systems whereby the stationary probability density function (PDF) changes its topology. The current state of the art for detecting these bifurcations…

Algebraic Topology · Mathematics 2024-06-10 Sunia Tanweer , Firas A. Khasawneh

We present a machine learning approach that leverages persistent homology to classify bacterial flagellar motors into two functional states: rotated and stalled. By embedding protein structural data into a topological framework, we extract…

Biomolecules · Quantitative Biology 2025-12-19 Zakaria Lamine , Abdelatif Hafid , Mohamed Rahouti

Feature selection has remained a daunting challenge in machine learning and artificial intelligence, where increasingly complex, high-dimensional datasets demand principled strategies for isolating the most informative predictors. Despite…

Machine Learning · Statistics 2025-12-02 Mousam Sinha , Tirtha Sarathi Ghosh , Ridam Pal

Supervised machine learning pipelines trained on features derived from persistent homology have been experimentally observed to ignore much of the information contained in a persistence diagram. Computing persistence diagrams is often the…

Machine Learning · Statistics 2025-07-11 Nicole Abreu , Parker B. Edwards , Francis Motta

Skin cancer is one of the most common cancers in the United States. As technological advancements are made, algorithmic diagnosis of skin lesions is becoming more important. In this paper, we develop algorithms for segmenting the actual…

Computer Vision and Pattern Recognition · Computer Science 2019-05-22 Yu-Min Chung , Chuan-Shen Hu , Austin Lawson , Clifford Smyth

The focus of this work is on rigorous mathematical analysis of the topological derivative based detection algorithms for the localization of an elastic inclusion of vanishing characteristic size. A filtered quadratic misfit is considered…

Analysis of PDEs · Mathematics 2012-11-29 Habib Ammari , Elie Bretin , Josselin Garnier , Wenjia Jing , Hyeonbae Kang , Abdul Wahab

The coalescence of binary neutron stars are one of the main sources of gravitational waves for ground-based gravitational wave detectors. As Bayesian inference for binary neutron stars is computationally expensive, more efficient and faster…

General Relativity and Quantum Cosmology · Physics 2019-11-20 Yann Bouffanais , Edward K. Porter

Reconstructing models from unorganized point clouds presents a significant challenge, especially when the models consist of multiple components represented by their surface point clouds. Such models often involve point clouds with noise…

Computational Geometry · Computer Science 2025-08-26 Yu Chen , Hongwei Lin

Understanding the structure of high-dimensional data is fundamental to neuroscience and other data-intensive scientific fields. While persistent homology effectively identifies basic topological features such as "holes," it lacks the…

Algebraic Topology · Mathematics 2025-07-16 Ekaterina S. Ivshina , Galit Anikeeva , Ling Zhou

In data clustering, it is often desirable to find not just a single partition into clusters but a sequence of partitions that describes the data at different scales (or levels of coarseness). A natural problem then is to analyse and compare…

Algebraic Topology · Mathematics 2025-04-25 Juni Schindler , Mauricio Barahona

Diffusion models (DMs) have recently shown remarkable performance on inverse problems (IPs). Optimization-based methods can fast solve IPs using DMs as powerful regularizers, but they are susceptible to local minima and noise overfitting.…

Machine Learning · Computer Science 2026-04-21 Yingzhi Xia , Setthakorn Tanomkiattikun , Liangli Zhen , Zaiwang Gu

Finding an optimal parameter of a black-box function is important for searching stable material structures and finding optimal neural network structures, and Bayesian optimization algorithms are widely used for the purpose. However, most of…

Machine Learning · Computer Science 2019-02-27 Tatsuya Shiraishi , Tam Le , Hisashi Kashima , Makoto Yamada

Machine learning has emerged as an attractive alternative to experiments and simulations for predicting material properties. Usually, such an approach relies on specific domain knowledge for feature design: each learning target requires…

Materials Science · Physics 2020-03-10 Aditi S. Krishnapriyan , Maciej Haranczyk , Dmitriy Morozov

This article studies the robust version of persistent homology based on trimming methodology to capture the geometric feature through support of the data in presence of outliers. Precisely speaking, the proposed methodology works when the…

Methodology · Statistics 2026-01-01 Tuhin Subhra Mahato , Subhra Sankar Dhar

Persistent homology is used to track the appearance and disappearance of features as we move through a nested sequence of topological spaces. Equating the nested sequence to a filtration and the appearance and disappearance of features to…

Statistics Theory · Mathematics 2020-12-17 Kathryn Garside , Aida Gjoka , Robin Henderson , Hollie Johnson , Irina Makarenko

In this paper, we study the stability of commonly used filtration functions in topological data analysis under small perturbations of the underlying nonrandom point cloud. Relying on these stability results, we then develop a test procedure…

Statistics Theory · Mathematics 2024-10-10 Johannes Krebs , Daniel Rademacher

The muon tomography technique, based on multiple Coulomb scattering of cosmic ray muons, has been proposed as a tool to detect the presence of high density objects inside closed volumes. In this paper a new and innovative method is…

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