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The quartet distance is a measure of similarity used to compare two unrooted phylogenetic trees on the same set of $n$ leaves, defined as the number of subsets of four leaves related by a different topology in both trees. After a series of…

Data Structures and Algorithms · Computer Science 2020-12-03 Bartłomiej Dudek , Paweł Gawrychowski

The subspace approximation problem Subspace($k$,$p$) asks for a $k$-dimensional linear subspace that fits a given set of points optimally, where the error for fitting is a generalization of the least squares fit and uses the $\ell_{p}$ norm…

Data Structures and Algorithms · Computer Science 2011-01-04 Amit Deshpande , Kasturi Varadarajan , Madhur Tulsiani , Nisheeth K. Vishnoi

The Hilbert metric is a distance function defined for points lying within the interior of a convex body. It arises in the analysis and processing of convex bodies, machine learning, and quantum information theory. In this paper, we show how…

Computational Geometry · Computer Science 2023-12-12 Auguste Gezalyan , Soo Kim , Carlos Lopez , Daniel Skora , Zofia Stefankovic , David M. Mount

We investigate algorithms with predictions in computational geometry, specifically focusing on the basic problem of computing 2D Delaunay triangulations. Given a set $P$ of $n$ points in the plane and a triangulation $G$ that serves as a…

Computational Geometry · Computer Science 2026-01-14 Sergio Cabello , Timothy M. Chan , Panos Giannopoulos

This paper gives simple distributed algorithms for the fundamental problem of computing graph distances in the Congested Clique model. One of the main components of our algorithms is fast matrix multiplication, for which we show an…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-03-24 Keren Censor-Hillel , Ami Paz

We study the problem of finding a temporal hybridization network for a set of phylogenetic trees that minimizes the number of reticulations. First, we introduce an FPT algorithm for this problem on an arbitrary set of $m$ binary trees with…

Data Structures and Algorithms · Computer Science 2022-11-09 Sander Borst , Leo van Iersel , Mark Jones , Steven Kelk

The Fr\'echet distance is a popular metric for curves; however, its bottleneck character is a disadvantage in many applications. Here we introduce two variants of the Fr\'echet distance to cope with this problem and expand the work on…

Computational Geometry · Computer Science 2022-02-28 Maike Buchin , Lukas Plätz

The $k$-mismatch problem consists in computing the Hamming distance between a pattern $P$ of length $m$ and every length-$m$ substring of a text $T$ of length $n$, if this distance is no more than $k$. In many real-world applications, any…

The Fr\'echet distance is a well-studied and very popular measure of similarity of two curves. The best known algorithms have quadratic time complexity, which has recently been shown to be optimal assuming the Strong Exponential Time…

Computational Geometry · Computer Science 2014-08-07 Karl Bringmann , Marvin Künnemann

We study the problem of computing a shortest tour that visits a sequence of $k$ polygons $P_1,\dots, P_k$ with a total number of $n$ vertices. A tour is an oriented curve such that there exist points $p_i\in P_i$ for all $i$ where $p_i$…

Computational Geometry · Computer Science 2026-05-14 Katrin Casel , Sándor Kisfaludi-Bak , Linda Kleist , Jeroen S. K. Lamme , Eunjin Oh , Yanheng Wang

Proximal distance algorithms combine the classical penalty method of constrained minimization with distance majorization. If $f(\boldsymbol{x})$ is the loss function, and $C$ is the constraint set in a constrained minimization problem, then…

Optimization and Control · Mathematics 2019-05-21 Kevin L. Keys , Hua Zhou , Kenneth Lange

The proximal gradient algorithm has been popularly used for convex optimization. Recently, it has also been extended for nonconvex problems, and the current state-of-the-art is the nonmonotone accelerated proximal gradient algorithm.…

Optimization and Control · Mathematics 2017-05-24 Quanming Yao , James T. Kwok , Fei Gao , Wei Chen , Tie-Yan Liu

In this paper, we prove that the set of triangulations of a polygon can be equipped with an order to become a lattice. First, we define this order. In [HN99], authors defined the flip operator and then prove some properties of the graph of…

Combinatorics · Mathematics 2018-06-08 Thinh D. Nguyen , Ha Duong Phan

A high-level description of an algorithm which computes the minimum perimeter triangle enclosing a convex polygon in linear time exists in the literature. Besides that an implementation of the algorithm is given in the subsequent work.…

Metric Geometry · Mathematics 2016-06-08 V. Ermolaev

A Fixed-Parameter Tractable (\FPT) $\rho$-approximation algorithm for a minimization (resp. maximization) parameterized problem $P$ is an FPT algorithm that, given an instance $(x, k)\in P$ computes a solution of cost at most $k \cdot…

Data Structures and Algorithms · Computer Science 2013-08-19 Rajesh Chitnis , MohammadTaghi Hajiaghayi , Guy Kortsarz

The Fr\'{e}chet distance is a well-studied similarity measure between curves that is widely used throughout computer science. Motivated by applications where curves stem from paths and walks on an underlying graph (such as a road network),…

Computational Geometry · Computer Science 2024-11-20 Anne Driemel , Ivor van der Hoog , Eva Rotenberg

A triangulation of a polygon is a subdivision of it into triangles, using diagonals between its vertices. Two different triangulations of a polygon can be related by a sequence of flips: a flip replaces a diagonal by the unique other…

Combinatorics · Mathematics 2024-02-12 Karin Baur , Diana Bergerova , Jenni Voon , Lejie Xu

We revisit a fundamental problem in string matching: given a pattern of length m and a text of length n, both over an alphabet of size $\sigma$, compute the Hamming distance between the pattern and the text at every location. Several…

Data Structures and Algorithms · Computer Science 2020-01-03 Timothy M. Chan , Shay Golan , Tomasz Kociumaka , Tsvi Kopelowitz , Ely Porat

We consider the following natural "above guarantee" parameterization of the classical Longest Path problem: For given vertices s and t of a graph G, and an integer k, the problem Longest Detour asks for an (s,t)-path in G that is at least k…

Data Structures and Algorithms · Computer Science 2018-04-24 Ivona Bezáková , Radu Curticapean , Holger Dell , Fedor V. Fomin

A directed odd cycle transversal of a directed graph (digraph) $D$ is a vertex set $S$ that intersects every odd directed cycle of $D$. In the Directed Odd Cycle Transversal (DOCT) problem, the input consists of a digraph $D$ and an integer…

Data Structures and Algorithms · Computer Science 2017-04-17 Daniel Lokshtanov , M. S. Ramanujan , Saket Saurabh , Meirav Zehavi